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fractal-analytics-platform / fractal-faim-ipa

BSD 3-Clause "New" or "Revised" License
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fractal-faim-ipa

License PyPI Python Version CI

Provides Fractal tasks for the conversion of Molecular Devices ImageXpress microscope to OME-Zarr.

The conversion based on the faim-ipa library. This repo also contains some of the test data from the faim-ipa library, as well as test data from the ZMB provided by @fstur.

To use the MD Converter Task in Fractal, add the package form PyPI to your Fractal server by installing fractal-faim-ipa.

Development

You can install it locally in this way:

git clone https://github.com/jluethi/fractal-faim-ipa
cd fractal-faim-ipa
pip install -e .

Adding tasks to Fractal server

You can trigger a manual collection of the tasks:

  1. Create a package wheel: 
    pip install build
python -m build

This wheel is put into the dist folder.

  1. Collect your package from Fractal web: use the local task collection in fractal web and provide the /path/to/package/dist/faim-ipa-version-details.whl

Alternatively, you can collect the task in Fractal via the CLI tool:

fractal task collect /path/to/package/dist/faim-ipa-version-details.whl