franciscozorrilla / EMBOMicroCom

Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities
https://www.embl.org/about/info/course-and-conference-office/events/mcd22-01/
MIT License
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🔬 EMBOMicroCom: Metabolite and species dynamics in microbial communities 🧬

DOI

💻 Metabolic modeling tutorial (Day 5)

💰 Learning Outcomes

📚Suggested Reading

⛏ Materials

🎯 Exercises

  1. Start by cloning this repo
  2. Inspect metabolic models and media file
  3. Simulate community interactions between bacteria and yeast
  4. Explore effect of interactions as a function of media composition
  5. Generate metabolic models and predict interactions using your own genomes (BONUS)

🏄 Metabolic Modeling Repos

Resources

Tools

🥼 Contributors