Master

Repo for the master project

Key ref Read Richard sim PHD paper https://researcharchive.lincoln.ac.nz/bitstream/handle/10182/6044/Sim_phd2.pdf?sequence=4&isAllowed=y

Packge dependencies

PDF scraper package tabulizer was archived. Need to install from local. https://cran.r-project.org/src/contrib/Archive/tabulizer/

Environment

ApsimNG

Custom build up to date.

Python

Python version 3.7.7

appdirs==1.4.3
attrs==19.1.0
backcall==0.1.0
bleach==3.1.0
colorama==0.4.1
cycler==0.10.0
decorator==4.4.0
defusedxml==0.6.0
distlib==0.3.0
entrypoints==0.3
filelock==3.0.12
importlib-metadata==1.6.0
ipykernel==5.1.2
ipython==7.8.0
ipython-genutils==0.2.0
ipywidgets==7.5.1
jedi==0.15.1
Jinja2==2.10.1
joblib==0.14.1
jsonschema==3.0.2
jupyter==1.0.0
jupyter-client==5.3.3
jupyter-console==6.0.0
jupyter-core==4.5.0
kiwisolver==1.1.0
lxml==4.5.0
MarkupSafe==1.1.1
matplotlib==3.2.1
mistune==0.8.4
nbconvert==5.6.0
nbformat==4.4.0
notebook==6.0.1
numpy==1.18.2
pandas==1.0.3
pandocfilters==1.4.2
parso==0.5.1
patsy==0.5.1
pickleshare==0.7.5
prometheus-client==0.7.1
prompt-toolkit==2.0.9
Pygments==2.4.2
pyparsing==2.4.6
pyrsistent==0.15.4
python-dateutil==2.8.0
pytz==2019.2
pywin32==227
pywinpty==0.5.5
pyzmq==19.0.0
qtconsole==4.5.5
scikit-learn==0.22.2.post1
scipy==1.4.1
Send2Trash==1.5.0
six==1.12.0
statsmodels==0.11.1
terminado==0.8.2
testpath==0.4.2
tornado==6.0.3
traitlets==4.3.2
virtualenv==20.0.15
wcwidth==0.1.7
webencodings==0.5.1
widgetsnbextension==3.5.1
zipp==3.1.0

R

R version 3.6.2

testthat==2.3.1
devtools==2.2.1
usethis==1.5.1
shinyjs==1.1
shiny==1.4.0
pander==0.6.3
knitr==1.27
checkpoint==0.4.8
openxlsx==4.1.4
viridis==0.5.1
viridisLite==0.3.0
reticulate==1.14
inspectdf==0.0.7
RPostgreSQL==0.6-2
RSQLite==2.2.0
DBI==1.1.0
lubridate==1.7.4
forcats==0.4.0
stringr==1.4.0
dplyr==0.8.4
purrr==0.3.3
readr==1.3.1
tidyr==1.0.2
tibble==2.1.3
ggplot2==3.2.1
tidyverse==1.3.0
readxl==1.3.1
data.table==1.12.8