NeoAntigenWorkflow

Dependency

• python3 (Author developed on python3.7.0, but python3+ should work)
• Biopython
• requests
• xmltodict
• pathos
• numpy
• pandas
• matplotlib
• regex

  pip install -r prerequsite.txt

Module1: MHC-binding protein prediction

Normal usage:

python3 mhcPresent.py --help

Module2: GTEx viewer

python3 queryGTEx.py --help

Module3: Receptor protein prediction

python3 NeoEpitopePredictor.py --help