Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation
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step1 AltAnalyze intron bed file version conflict #6
While testing the docker on my local computer, I noticed that the intron bed file can not be properly generated, it is weird based on just looking at the line the error got popped out.
Traceback (most recent call last):
File "/usr/src/app/altanalyze/import_scripts/BAMtoExonBED.py", line 407, in
parseExonReferences(bam_dir,reference_dir,intronRetentionOnly=True,species=species)
File "/usr/src/app/altanalyze/import_scripts/BAMtoExonBED.py", line 106, in parseExonReferences
chr,start,stop,exon,null,strand = ref_entries[:6]
ValueError: need more than 1 value to unpack
While testing the docker on my local computer, I noticed that the intron bed file can not be properly generated, it is weird based on just looking at the line the error got popped out.
Traceback (most recent call last): File "/usr/src/app/altanalyze/import_scripts/BAMtoExonBED.py", line 407, in
parseExonReferences(bam_dir,reference_dir,intronRetentionOnly=True,species=species)
File "/usr/src/app/altanalyze/import_scripts/BAMtoExonBED.py", line 106, in parseExonReferences
chr,start,stop,exon,null,strand = ref_entries[:6]
ValueError: need more than 1 value to unpack