freebayes freebayes issues

freebayes / freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

http://arxiv.org/abs/1207.3907

MIT License

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issues

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SNP but not seen in IGV

#815 cpwater opened 1 month ago
0
Missing 'aln.bam' file in Naive variant calling readme example

#814 veghp opened 1 month ago
0
freebayes-parallel error

#813 bfraser-commits opened 1 month ago
1
Strand Bias probability

#812 shamavirani opened 1 month ago
0
alterations next to deletion not considered in alt allele

#811 FelixMoelder closed 2 months ago
0
question on using --bam-list

#810 goeckeritz opened 3 months ago
0
Statically linked binary for freebayes 1.3.8 are missing

#809 marc-sturm opened 3 months ago
0
Compressed bgzip reference file

#808 aghozlane opened 3 months ago
0
In/Del variants missed by Freebayes 1.3.8

#807 h836472 opened 4 months ago
4
Failed to clone 'contrib/multichoose' a second time, aborting

#806 konopinski opened 4 months ago
2
Can't access mailing group - banned content

#805 mcjmigdal opened 5 months ago
0
Two adjacent SNPs reported rather then a MNP?

#804 Jesspalmer92 opened 5 months ago
0
Freebayes 1.3.8 does not build

#803 feghalya opened 5 months ago
0
Make vcflib, smithwaterman, and fastahack external includes explicit

#802 mr-c opened 5 months ago
0
FreeBayes in Nanopore data

#801 pabloangulo7 closed 1 month ago
2
freebayes stuck at a certain position

#800 emilydolivo97 closed 1 month ago
2
Fixed failed to clone permission denied error

#799 zoldrax opened 6 months ago
0
Clarification on skip-coverage parameter

#798 CosteaPaul closed 2 months ago
2
Calling genotypes using RNA-seq data

#797 desmodus1984 closed 2 months ago
2
Assertion '__n < this->size()' failed. Error when running freebayes

#796 kinchuhrithik closed 7 months ago
6
Improving freebayes Performance for Nanopore Sequencing Data

#795 QuentinPerriere closed 2 months ago
3
FreeBayes sudden error

#794 emilydolivo97 closed 7 months ago
4
Incongruencies in GT assignment

#793 Virginia-b opened 7 months ago
1
frequency of each variant per sample

#792 emilydolivo97 closed 3 weeks ago
6
variant calling

#791 DaliBAmor closed 3 months ago
4
Error during freebayes call for one single chromosome

#790 floro5 closed 6 months ago
1
vcffirstheader broken pipe freebayes-parallel

#789 ericmalekos closed 6 months ago
2
Error signal 11 with some combination of files

#788 Knight-JChev closed 7 months ago
1
Multiple bases returned instead of SNPs in one of the two replicates

#787 NitKV opened 8 months ago
0
Freebayes 1.3.7 fails its build time test suite.

#786 nileshpatra closed 7 months ago
1
freebayes did not report variants with AC < 4?

#785 yzliu01 opened 8 months ago
0
incorrect GQ type

#784 cmatKhan closed 5 months ago
1
Overlapping read pairs question

#783 emmecola closed 5 months ago
2
Very high QUAL values

#782 mbhall88 opened 9 months ago
7
Inexplicably low DP values

#781 jpalmer37 opened 9 months ago
3
Genotype read percentages

#780 ceromova closed 5 months ago
2
parallelization of coverage_to_regions.py

#779 husamia closed 6 months ago
2
Actual full name arguments for -iXU don't seem to match --help

#778 G3N0M3 opened 11 months ago
0
freebayes does not work with low values of --min-alternate-fraction 0

#777 friburgo-moc opened 1 year ago
0
'Illegal instruction' error freebayes v1.3.7

#776 nadjano closed 8 months ago
5
BA.2.86 SRR25750759 ins21608 call surprisingly dependent --min-alternate-fraction parameter

#775 krobison13 opened 1 year ago
2
Freebayes stuck

#774 seynard closed 8 months ago
3
Strand bias in merge files

#773 ceromova closed 1 year ago
2
parsedAlternates: error while running the -@ --input -variant option

#772 usmart31 closed 10 months ago
3
Aborted (core dumped)

#771 suhuanhou opened 1 year ago
1
pre-built binary not available

#770 vappiah closed 6 months ago
4
Cannot install freebayes with conda

#769 i-guigon closed 6 months ago
3
genotype calling are not consistent with RO and AO number

#768 suncpark opened 1 year ago
1
ARM NEON build fails: undefined reference to rans_compress_O0_32x16_neon in bundled htslib

#767 buildmaster0 opened 1 year ago
3
very slow process

#766 lmanchon closed 1 year ago
3