issues
search
freeseek
/
gtc2vcf
Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
MIT License
131
stars
22
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add an explicit FORMAT/TAG for illumina genotype?
#69
rajwanir
opened
1 week ago
3
ALLELE_A and ALLELE_B encoding in the VCF?
#68
rajwanir
opened
1 week ago
4
bpm with an alternate reference csv_manifest simultanously?
#67
rajwanir
closed
1 week ago
2
Error while running linsolve1
#66
Dazcam
opened
1 week ago
3
Loci skipped with SourceSeq mapping.
#65
rajwanir
opened
2 months ago
1
CNV and coordinates mapping issue?
#64
rajwanir
opened
2 months ago
1
Any suggestions on handling manifests with missing RefStrand and SourceSeq columns?
#63
rajwanir
closed
2 months ago
3
Unexpected Error: uncaught exception
#62
Tianwen-lab-star
opened
3 months ago
2
Recommended filtering
#61
iranmdl
closed
5 months ago
11
Segfault with cel-files not succesful.
#60
teepean
opened
5 months ago
1
Error Encountered while parsing the input
#59
crbeam
opened
8 months ago
2
Affy2vcf snp-posterior file
#58
IPriscilla
opened
8 months ago
9
empty vcf final file
#57
sgomes-catarina
closed
9 months ago
3
Input not detected as vcf or bcf format
#56
cantlap
closed
9 months ago
3
Final BCF not being created.
#55
mahaaamir
closed
1 year ago
5
vcf file blank
#54
dtzhu337
closed
9 months ago
1
bioconda
#53
lightning-auriga
closed
9 months ago
0
Error for installing AutoConvert
#52
hyunnnie
closed
9 months ago
1
plink matrix format
#51
gevro
closed
1 year ago
6
VCF lines lacking GT tag
#50
kasia-te
closed
1 year ago
2
Failed to open file "Ou" : No such file or directory
#49
crbeam
closed
1 year ago
1
GTC files cannot be listed through both command interface and file list when only submitting a .txt file
#48
hsmith9002
closed
1 year ago
4
vcf files not being saved
#47
mahaaamir
closed
1 year ago
3
idat or gtc in command line
#46
jeantristanb
closed
1 year ago
1
gtc2vcf cannot open gtc files
#45
mahaaamir
closed
1 year ago
1
ERROR in converting CHP to VCF
#44
lizhan96
closed
1 year ago
1
how to convert CEL to CHP?
#43
lizhan96
closed
1 year ago
2
How to get Call_Freq, AAfreq, BBfreq, and AB Freq
#42
mansi800
closed
1 year ago
0
Feature request: alternative genome reference for --genome-studio input
#41
robkar
closed
1 year ago
0
No output files generated for Illunmina reports
#40
rashindrie
closed
2 years ago
15
Genomestudio file to vcf
#39
PriscillaPoemba
closed
2 years ago
11
affy2vcf: How to make the IDs of generated vcf files be rsid from annotation files given by Affymetrix but not probeset id?
#38
YuquanW
closed
2 years ago
2
compressed VCF
#37
Ballote
closed
2 years ago
2
No output VCF files
#36
Ballote
closed
3 years ago
7
Citation
#35
xsun1229
closed
3 years ago
1
Some installation issues
#34
xsun1229
closed
3 years ago
7
Question affy2vcf
#33
ghost
closed
2 years ago
2
build in macOS
#32
sinamajidian
closed
3 years ago
1
Error: Too many open files
#31
QidiFeng
closed
3 years ago
0
NORMX/NORMY/R/THETA missing from GenomeStudio text output
#30
robkar
closed
3 years ago
0
Error in names(object) <- nm gtc2vcf_plot.R
#29
PriscillaPoemba
closed
3 years ago
5
Failed to read 1359180426 bytes when convert gtc files
#28
whecrane
closed
3 years ago
5
IDAT not found
#27
whecrane
closed
3 years ago
1
Some package installed wrong in Centos
#26
whecrane
closed
3 years ago
2
No releases
#25
pneerincx
closed
3 years ago
5
Possible to extract SNP table metrics?
#24
oyhel
closed
3 years ago
2
Docker
#23
aardes
closed
3 years ago
5
Problem compile affy2vcf.c
#22
zgtman
closed
3 years ago
1
will generate same output as using AutoConvert via Beeline?
#21
wangfan860
closed
3 years ago
1
Sample_ID from samples file not saved to VCF -file
#20
kihear
closed
4 years ago
2
Next