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freeseek
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mocha
MOsaic CHromosomal Alterations (MoChA) caller
MIT License
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typos
#49
yuw444
closed
1 month ago
0
imp5Converter Output file format is not supported
#48
jiang53peng
opened
5 months ago
7
Can I Use CEL Files from Axiom Precision Medicine Research Array (PMRA) Release 3 to Generate CHP Files and Obtain VCF Files Annotated with GC, BAF, and LRR Content?
#47
Yanranli007
closed
4 months ago
8
eLRR: Clarifcation on LRR adjustments
#46
ryan-ed-bailey
opened
6 months ago
6
Error [E::bgzf_read_block] Invalid BGZF header at offset 85619
#45
IPriscilla
opened
7 months ago
1
Use combined 1kG and HRC as reference panel for imputation
#44
iranmdl
opened
7 months ago
1
genetic map grch38
#43
iranmdl
closed
7 months ago
1
Incomplete LOH call(s) on Chr12p
#42
ryan-ed-bailey
closed
8 months ago
10
Unable to infer the A and B alleles while parsing the site...
#41
AkshajD
opened
10 months ago
11
mochatools input format
#40
Yan0089
closed
1 year ago
3
no mLOY result but normal mLOX and mCA of male in autosomes
#39
caragraduate
closed
1 year ago
6
Imputation Error - terminate called after throwing an instance of std::length_error
#38
AkshajD
closed
1 year ago
1
Any suggestions on filters for downstream analysis?
#37
dessytat
closed
1 year ago
2
The sequence "hs37d5" not found and "No BGZF EOF marker" errors
#36
AkshajD
closed
1 year ago
1
GC content in VCF file
#35
AkshajD
closed
1 year ago
2
Written 0 variants for all contigs
#34
BJWiley233
closed
1 year ago
1
Questions about how to filter callset
#33
uqzqiao
closed
2 years ago
2
Could not parse gender (0/1/2) in the sample statistics file
#32
uqzqiao
closed
1 year ago
2
check bpm or not
#31
psytky03
closed
2 years ago
2
Conceptual Confusion about CNV and mCA
#30
Xxhongs
closed
2 years ago
2
query about calling CNV with multi-samples
#29
Xxhongs
closed
2 years ago
1
question about calling CNV with tumor and normal-pair sample
#28
lizhan96
closed
1 year ago
3
question with call cnv for array data
#27
lizhan96
closed
1 year ago
8
Crash before/during call-gtc_tsv, difficult to interpret the error message...
#26
Jolleboll
closed
1 year ago
1
Issues with the number of heterozygous sites
#25
katharineqn
closed
2 years ago
0
Minor fix in generating $pfx.auto.lines
#24
psytky03
closed
2 years ago
1
1.15?
#23
outpaddling
closed
2 years ago
2
age_plot.R script not available
#22
Emmanuel-CEPH
closed
1 year ago
1
bcftools +mocha generates an empty file.as.bcf
#21
Emmanuel-CEPH
closed
2 years ago
1
FreeBSD port available
#20
outpaddling
closed
1 year ago
1
Problem with chr X XTR and Non_par regions
#19
Emmanuel-CEPH
closed
2 years ago
7
impute5
#18
yifnzhao
closed
2 years ago
2
Question about call rate
#17
yifnzhao
closed
2 years ago
2
Portability patches
#16
outpaddling
closed
2 years ago
2
Why HMM?
#15
victormaricato
closed
2 years ago
2
Working with BAM files
#14
fmpds
closed
2 years ago
19
Some questions when plotting results
#13
rashindrie
closed
2 years ago
6
Format of the file with call rate information
#12
rashindrie
closed
3 years ago
4
Question compiling with Homebrew GCC 10.2.0_4
#11
ghost
closed
3 years ago
2
Question regarding setting up MoCha on Google Cloud
#10
xuj18
closed
3 years ago
2
Download link of impute5 won't open, Can you provide other links
#9
heweihuang
closed
3 years ago
1
No releases
#8
pneerincx
closed
3 years ago
1
Missing GC info field
#7
pukutanuki
closed
4 years ago
3
HTTP request sent, awaiting response... 404 Not Found
#6
MohdRashid01
closed
4 years ago
5
mocha on sequencing vcf
#5
JenniferShelton
closed
4 years ago
1
Can't find file to patch at input line 3
#4
vbruat
closed
5 years ago
2
segfault at basic qc step
#3
kylec
closed
5 years ago
6
List of segmental duplications
#2
lemieuxl
closed
5 years ago
2
404 Error for downloading bcftools patches
#1
dantaki
closed
6 years ago
1