freiburgermsu / codons

A Python module that translates DNA and RNA nucleotide sequences into the sequences of the encodes set of proteins.
MIT License
0 stars 0 forks source link

Translating, Transcribing, and Investigating Genetic Sequences and their corresponding Proteins

|PyPI version| |Actions Status| |docs| |Downloads| |License|

.. |PyPI version| image:: https://img.shields.io/pypi/v/codons.svg?logo=PyPI&logoColor=brightgreen :target: https://pypi.org/project/codons/ :alt: PyPI version

.. |Actions Status| image:: https://github.com/freiburgermsu/codons/workflows/Test%20Codons/badge.svg :target: https://github.com/freiburgermsu/codons/actions :alt: Actions Status

.. |License| image:: https://img.shields.io/badge/License-MIT-blue.svg :target: https://opensource.org/licenses/MIT :alt: License

.. |Downloads| image:: https://pepy.tech/badge/Codons :target: https://pepy.tech/project/Codons :alt: Downloads

.. |docs| image:: https://readthedocs.org/projects/codons/badge/?version=latest :target: https://codons.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status

The Codons module is a lightweight tool for 1) conducting transcription and translation of genetic sequences, either from a FASTA format or a string; 2) making and reading FASTA or multi-FASTA files; and 3) conducting BLAST searches of protein and nucleotide sequences. Example Notebooks of these features are offered in the "examples" directory of the Codons GitHub repository <https://github.com/freiburgermsu/codons/tree/main/examples>_.

Installation +++++++++++++

The following command installs Codons in a command prompt/terminal environment::

pip install codons

The full documentation is available on ReadTheDocs <https://codons.readthedocs.io/en/latest/>_.