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fritzsedlazeck
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SURVIVOR
Toolset for SV simulation, comparison and filtering
MIT License
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SIGSEGV with manta data
#72
lindenb
closed
5 years ago
3
how SURVIVOR merge works in case of DEL ?
#71
unique379r
closed
5 years ago
1
SURVIVOR merge GT
#70
apaul7
closed
5 years ago
8
Intersection of multiple vcfs
#69
unique379r
closed
5 years ago
6
SURVIVOR filter using bed
#68
Hughes-Shin
closed
5 years ago
2
Genotyping supported in SURVIVOR?
#67
cedkid
closed
5 years ago
6
SURVIVOR merge files outputs no sites
#66
complexgenome
closed
5 years ago
9
Merge strategy multiple samples and tools
#65
maleasy
closed
5 years ago
7
Survivor limits?
#64
danimatias
closed
5 years ago
1
SURVIVOR merge takes cross chromosomes to merge
#63
unique379r
closed
5 years ago
8
Limit size of variants
#62
Jordi-V
closed
5 years ago
3
Same position in two different lines
#61
Jordi-V
closed
5 years ago
1
somatic SV calls not merging correctly
#60
nesilin
closed
5 years ago
2
merge produces invalid VCF when input VCFs contain a common sample name
#59
Lenbok
closed
5 years ago
4
merge produces invalid VCF when used on Manta VCFs
#58
Lenbok
closed
5 years ago
5
character other than ACTG in simulated reads
#57
ramcn
closed
5 years ago
1
Large SURVIVOR merge operation
#56
lslochov
closed
5 years ago
1
Wrong merge outputs
#55
songtaogui
closed
5 years ago
3
SURVIVOR merge question
#54
tiplud
closed
5 years ago
27
vcftobed info
#53
yuntwang
closed
5 years ago
2
SURVIVOR merge produces unsorted VCFs
#52
amwenger
closed
5 years ago
1
Improve compliance of "merge" output to VCF specification
#51
amwenger
closed
5 years ago
0
VCF merge about strand
#50
yuntwang
closed
5 years ago
2
merge vcf : Information for DR
#49
StevenIg
closed
5 years ago
2
SV position
#48
sohnjangil
closed
5 years ago
2
SURVIVOR merge AVGLEN positive when SVTYPE=DEL
#47
wiraki
closed
4 years ago
3
Duplication max length does not work
#46
MehmetGoktay
closed
5 years ago
4
SVTYPE DUP merging into NA
#45
MalhotraAnkit
closed
5 years ago
2
SURVIVOR merge
#44
wiraki
closed
5 years ago
6
Details about simSV parameter
#43
MehmetGoktay
closed
6 years ago
2
Compiling error
#42
jaesvi
closed
6 years ago
2
using NA12878_nano_error_profile_bwa.txt
#41
ramcn
closed
6 years ago
5
Detail about SURVIVOR simSV
#40
harazono
closed
6 years ago
4
SURVIVOR scanreads output doesn't contain any information.
#39
harazono
closed
6 years ago
6
filter by min SV size using proportion of SV overlapping
#38
alpreyes
closed
6 years ago
3
vcftobed use AVGLEN values in INFO column
#37
alpreyes
closed
6 years ago
3
SURVIVOR filter removing all SV's and receiving error message
#36
alpreyes
closed
6 years ago
3
is there a way to simulate large deletions by simSV?
#35
arkyl
closed
6 years ago
2
merge strategy
#34
shishuo16
closed
6 years ago
1
Terminate program as it could not find a non overlapping region
#33
YiweiNiu
closed
6 years ago
6
options for merge
#32
shishuo16
closed
6 years ago
4
merge vcf SVTYPE
#31
tgong1
closed
6 years ago
2
merge vcf: some entries failed to merge
#30
arkyl
closed
6 years ago
5
cend.first and cend.second in combine_svs.cpp
#29
lsantuari
closed
6 years ago
1
SVTYPE <NA>
#28
Madelinehazel
closed
6 years ago
3
SURVIVOR merge vcf files
#27
mroosmalen
closed
6 years ago
3
Assemblytics output to vcf
#26
JunKim-Worms
closed
6 years ago
3
some request on genotyping
#25
ytguojian
closed
6 years ago
12
somethings not understand
#24
ytguojian
closed
6 years ago
1
fix typo
#23
wdecoster
closed
6 years ago
1
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