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fritzsedlazeck
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SURVIVOR
Toolset for SV simulation, comparison and filtering
MIT License
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SURVIVOR bedtovcf conversion start position indexing
#122
Caro-Ca
closed
4 years ago
9
#error This file requires compiler and library support
#121
Caro-Ca
closed
4 years ago
4
Intrachromosomal BND to INV type?
#120
alsanju
opened
4 years ago
4
Add an optional arg to CLI to init simulations using a seed
#119
arnikz
opened
4 years ago
0
Is it possible to merge two multisample VCFs ?
#118
rozaimirazali
closed
4 years ago
1
SURVIVOR genComp outputs an empty matrix file
#117
astulaaa
closed
4 years ago
2
Coordinates of merged SVs
#116
Madelinehazel
closed
4 years ago
2
problem with gunzipped vcf.gz
#115
stefanucci-luca
opened
4 years ago
3
Getting a very vague "VCF Parser: could not open file"
#114
bhospelhorn
closed
4 years ago
5
SURVIVOR merge VCF output not found
#113
MikeWLloyd
closed
4 years ago
3
SURVIVOR filtering variants during merge as being supported by zero callers
#112
oneillkza
opened
4 years ago
3
compMUMMer usage
#111
jeff-sc-chu
opened
4 years ago
0
SURVIVOR filter based on bed: reciprocal overlap thr?
#110
MaestSi
opened
4 years ago
0
right SV number confusion after merge
#109
liufy11
opened
4 years ago
5
Issue on length of merged INS
#108
xinbeibei
opened
4 years ago
8
SURVIVOR filter Bionano vcf
#107
MaestSi
closed
4 years ago
4
confusion about SURVIVOR merge
#106
Gongjiao94
closed
4 years ago
2
simreads can't be used in NGMLR
#105
liufy11
opened
4 years ago
2
Using merge on a single VCF
#104
oalavijeh
closed
4 years ago
1
Check sequence similarity
#103
fritzsedlazeck
opened
5 years ago
0
Using compressed files
#102
oalavijeh
closed
5 years ago
4
Question about merge behavior
#101
gbdias
closed
5 years ago
6
Loss of variants after merging to union and changed depth
#100
weishwu
closed
5 years ago
9
SURVIVOR vcftobed conversion start position indexing
#99
info-97
opened
5 years ago
3
SURVIVOR stats with compressed file
#98
wdecoster
opened
5 years ago
1
Question regarding SV/CNVs during merging
#97
bmlett
opened
5 years ago
3
SURVIVOR filter based on AF has no effect
#96
oleraj
opened
5 years ago
4
Multiple samples in one VCF
#95
alexmathieu
closed
5 years ago
2
GL missing after merging
#94
usevani
closed
5 years ago
3
SURVIVOR with paragraph
#93
KamilSJaron
closed
5 years ago
5
GRIDSS support
#92
d-cameron
opened
5 years ago
14
SURVIVOR wrong merge
#91
Litterlemon
closed
5 years ago
3
Assemblytics to VCF with SV name leftover
#90
RenzoTale88
closed
5 years ago
3
Venn
#89
biomichal
closed
5 years ago
11
SURVIVOR merging to wrong svtypes.
#88
unique379r
closed
4 years ago
16
Finding CNVs that do not intersect/merge with reference set
#87
ggstatgen
closed
5 years ago
2
Will survivor merge two calls if they have different genotyping?
#86
cagaser
closed
5 years ago
1
Merged calls: variants present in none of the samples
#85
CWYuan08
closed
5 years ago
21
Merge SVLEN issue
#84
WEClarke
closed
5 years ago
9
pos is 0 in merged vcf
#83
suyanan
closed
5 years ago
1
Can SURVIVOR Merge PBSV results?
#82
biomichal
closed
5 years ago
11
Problem Merging SVs of 10X with delly, lumpy and breakdancer.
#81
unique379r
closed
5 years ago
14
SURVIVOR merge and size-based distance estimation
#80
ggstatgen
closed
5 years ago
5
streambuf/overflow shouln't advance the setg
#79
lindenb
closed
5 years ago
0
fix buf in underflow
#78
lindenb
closed
5 years ago
3
error when installing SURVIVOR
#77
LinXialab
closed
5 years ago
2
fix includes for https://github.com/fritzsedlazeck/SURVIVOR/issues/75
#76
lindenb
closed
5 years ago
1
Compilation problem (make)
#75
alvaralmstedt
closed
5 years ago
8
fix colon in manta id
#74
lindenb
closed
5 years ago
1
support for gzip stream
#73
lindenb
closed
5 years ago
1
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