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fulcrumgenomics / dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
MIT License
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Added support for VarDict to call multiple alleles at the same site #334

Closed gpratt closed 6 years ago

gpratt commented 6 years ago

Currently VarDict in dagr is unable to call multiple variants at the same loci.

This PR adds an option to enable the calling of multiple variants at the same loci by adding the --allVariants flag.

codecov-io commented 6 years ago

Codecov Report

Merging #334 into master will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #334   +/-   ##
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  Coverage   91.39%   91.39%           
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  Files          31       31           
  Lines        1139     1139           
  Branches      108      108           
=======================================
  Hits         1041     1041           
  Misses         98       98

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