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fulcrumgenomics / dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
MIT License
69 stars 14 forks source link

PicardTask to allow overriding default use of JDK inflater #367

Closed clintval closed 5 years ago

codecov-io commented 5 years ago

Codecov Report

Merging #367 into master will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #367   +/-   ##
=======================================
  Coverage   91.95%   91.95%           
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  Files          31       31           
  Lines        1156     1156           
  Branches       65       65           
=======================================
  Hits         1063     1063           
  Misses         93       93

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clintval commented 5 years ago

I think that's what I did? If the Boolean is true, the JDK inflater is used, if the Boolean is false, the Intel inflater (if available) is used. If no Boolean is provided, the Picard default is used.