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fulcrumgenomics / dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
MIT License
69 stars 15 forks source link

Add flag to allow for the output of all alignments in bwa mem. #380

Closed jacarey closed 4 years ago

jacarey commented 4 years ago

Additional alignments are output as secondary alignments.

codecov-commenter commented 4 years ago

Codecov Report

Merging #380 into master will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #380   +/-   ##
=======================================
  Coverage   91.47%   91.47%           
=======================================
  Files          31       31           
  Lines        1185     1185           
  Branches       80       80           
=======================================
  Hits         1084     1084           
  Misses        101      101

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