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fulcrumgenomics / dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
MIT License
69 stars 14 forks source link

Expose sort option in picard FastqToSam task #397

Closed mjhipp closed 3 years ago

mjhipp commented 3 years ago

Sorting can add a lot of time, I would like to be able to turn it off in some cases.

codecov-commenter commented 3 years ago

Codecov Report

Merging #397 (1feb26c) into master (58065bf) will not change coverage. The diff coverage is n/a.

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@@           Coverage Diff           @@
##           master     #397   +/-   ##
=======================================
  Coverage   91.40%   91.40%           
=======================================
  Files          31       31           
  Lines        1187     1187           
  Branches       83       83           
=======================================
  Hits         1085     1085           
  Misses        102      102
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unittests 91.40% <ø> (ø)

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