search

fumiomatsuda / mfapy

A python toolbox for 13C metabolic flux analysis
MIT License
17 stars 9 forks source link

Metabolite Coefficients in Reactions #4

Open uliebal opened 2 years ago

uliebal commented 2 years ago

In some situations it is good to assign stoichiometric numbers to metabolites in the reactions. For example in the Ecoli example r66 instead of Pyr + Pyr --> Val to write {2.0}Pyr --> Val. Or for an explicit biomass reaction with real valued stoichiometries. It would be great to have the notation {2.0}Pyr described in the documentation.

fumiomatsuda commented 10 months ago

I'm sorry for not getting back to you sooner. The description of ecoli model was revised following the kind comment. Please check "Explanation_1_13CMFA_toymodel.py" to grasp the functions of mfapy.