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funkelab / motile_toolbox

A toolbox for tracking with motile, including constructing candidate graphs and computing common features.
https://funkelab.github.io/motile_toolbox/
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motile_toolbox

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A suite of tools for helping to run tracking with motile. Current functionality includes creating candidate graphs from segmentations and track loading utilities. API documentation available at: https://funkelab.github.io/motile_toolbox.

Install Motile Toolbox

Motile Toolbox depends on motile, which in turn depends on gurobi and ilpy. These dependencies must be installed with conda before installing motile toolbox with pip.

conda install -c conda-forge -c funkelab -c gurobi ilpy
pip install motile-toolbox