fw262 TAR-scRNA-seq issues

fw262 / TAR-scRNA-seq

scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data

GNU General Public License v3.0

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issues

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uTAR-aTAR read alignment ratio

#18 Prakrithi-P opened 1 month ago
1
Is there any chance running this pipeline totally without 'REFGTF'?

#17 buhanfeng closed 1 year ago
2
- Code clean-up and README updates for `from_STARsolo`

#16 mckellardw closed 2 years ago
0
from_starsolo

#15 mckellardw closed 2 years ago
0
Is there any way to run the pipeline faster?

#14 genecell opened 2 years ago
1
Error in rule MergeBamAlignment

#13 HUPINLI opened 2 years ago
8
Availability of matrices utilized in the manuscript?

#12 diegoalexespi opened 2 years ago
1
Applicability of from_cellranger codes on 10X Visium ST-Seq bams

#11 Prakrithi-P opened 2 years ago
12
fail to create scTAR_cellranger env

#10 adonatiucsd opened 2 years ago
29
Error creating DigitalExpression and previous bam files are returned empty

#9 Prakrithi-P opened 3 years ago
13
Processing TAR-scRNA-seq outputs

#8 dkeitley opened 3 years ago
4
Cellranger vs STAR pipeline

#7 dkeitley closed 3 years ago
1
Adding new workflows to improve the flexibility of the TAR-scRNA-seq toolkit

#6 mckellardw closed 3 years ago
0
Adding new workflows to improve the flexibility of the TAR-scRNA-seq toolkit

#5 mckellardw closed 3 years ago
0
temp2.txt no such file or directory

#4 dkeitley closed 3 years ago
2
Error reading TAR_reads.bed file in calcHMMrefFlat

#3 dkeitley closed 3 years ago
4
Issues with pwd in bash script

#2 14zac2 closed 4 years ago
20
Create LICENSE

#1 fw262 closed 4 years ago
0