fziegner
commented
2 months ago Tobac is found in my case but instead I receive a different error while importing it:
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
Cell In[2], line 2
1 # Import tobac itself:
----> 2 import tobac
3 print('using tobac version', str(tobac.__version__))
File ~\Desktop\tobac_realcase_testing\testing_PR386\realcase_testing\Lib\site-packages\tobac\__init__.py:26
15 from .segmentation import (
16 segmentation_3D,
17 segmentation_2D,
18 watershedding_3D,
19 watershedding_2D,
20 )
21 from .centerofgravity import (
22 calculate_cog,
23 calculate_cog_untracked,
24 calculate_cog_domain,
25 )
---> 26 from .plotting import (
27 plot_tracks_mask_field,
28 plot_tracks_mask_field_loop,
29 plot_mask_cell_track_follow,
30 plot_mask_cell_track_static,
31 plot_mask_cell_track_static_timeseries,
32 )
33 from .plotting import (
34 plot_lifetime_histogram,
35 plot_lifetime_histogram_bar,
36 plot_histogram_cellwise,
37 plot_histogram_featurewise,
38 )
39 from .plotting import plot_mask_cell_track_3Dstatic, plot_mask_cell_track_2D3Dstatic
File ~\Desktop\tobac_realcase_testing\testing_PR386\realcase_testing\Lib\site-packages\tobac\plotting.py:20
18 import warnings
19 import logging
---> 20 from .analysis import lifetime_histogram
21 from .analysis import histogram_cellwise, histogram_featurewise
23 import numpy as np
File ~\Desktop\tobac_realcase_testing\testing_PR386\realcase_testing\Lib\site-packages\tobac\analysis\__init__.py:29
1 """Provide tools to analyse and visualize the tracked objects.
2 This module provides a set of routines that enables performing analyses
3 and deriving statistics for individual tracks, such as the time series
(...)
26 -----
27 """
---> 29 from tobac.analysis.cell_analysis import *
30 from tobac.analysis.feature_analysis import *
31 from tobac.analysis.spatial import *
File ~\Desktop\tobac_realcase_testing\testing_PR386\realcase_testing\Lib\site-packages\tobac\analysis\cell_analysis.py:18
16 from tobac.utils.mask import mask_cell, mask_cell_surface, mask_cube_cell
17 from tobac.utils.general import get_bounding_box
---> 18 from tobac.analysis.spatial import (
19 calculate_distance,
20 calculate_velocity,
21 )
23 __all__ = (
24 "cell_statistics_all",
25 "cell_statistics",
(...)
30 "calculate_overlap",
31 )
34 def cell_statistics_all(
35 input_cubes,
36 track,
(...)
45 **kwargs,
46 ):
File ~\Desktop\tobac_realcase_testing\testing_PR386\realcase_testing\Lib\site-packages\tobac\analysis\spatial.py:329
324 area = dists1 * dists2
326 return area
--> 329 @decorators.xarray_to_iris()
330 def calculate_area(features, mask, method_area=None, vertical_coord=None):
331 """Calculate the area of the segments for each feature.
332
(...)
375
376 """
378 features["area"] = np.nan
TypeError: xarray_to_iris() missing 1 required positional argument: 'func'
ERROR conda.cli.main_run:execute(124): `conda run python create_references.py --nb 2fe56c08928208bdd5416fc4f3ee560a3329b8f9 --sv ./testing_PR386 --name target_reference_data --nb_names [Example_OLR_Tracking_model]` failed. (See above for error)
Traceback (most recent call last):
File "C:\Users\Fabian\Desktop\tobac_realcase_testing\realcase_testing.py", line 323, in <module>
main()
File "C:\Users\Fabian\Desktop\tobac_realcase_testing\realcase_testing.py", line 289, in main
subprocess.run(
File "C:\Users\Fabian\miniforge3\envs\tobac_dev\lib\subprocess.py", line 526, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['mamba', 'run', '-p', './testing_PR386\\realcase_testing', 'python', 'create_references.py', '--nb', '2fe56c08928208bdd5416fc4f3ee560a3329b8f9', '--sv', './testing_PR386', '--name', 'target_reference_data', '--nb_names', '[Example_OLR_Tracking_model]']' returned non-zero exit status 1.
fsenf
Hi @fziegner ,
I created a description for using realcase testing for PRs. This is included here: #2 .
Somehow, the command is not working in my case and throws the following error:
Can you somehow reproduce the error?