source activate bioinfo
conda install -c igv igv
// or
python setup.py install
jupyter-nbextension install igv
Traceback (most recent call last):
File "/home/sacha/miniconda3/envs/bioinfo/bin/jupyter-nbextension", line 11, in <module>
sys.exit(main())
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/site-packages/jupyter_core/application.py", line 266, in launch_instance
return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/site-packages/traitlets/config/application.py", line 658, in launch_instance
app.start()
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/site-packages/notebook/nbextensions.py", line 988, in start
super(NBExtensionApp, self).start()
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/site-packages/jupyter_core/application.py", line 255, in start
self.subapp.start()
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/site-packages/notebook/nbextensions.py", line 716, in start
self.install_extensions()
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/site-packages/notebook/nbextensions.py", line 695, in install_extensions
**kwargs
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/site-packages/notebook/nbextensions.py", line 126, in install_nbextension
ensure_dir_exists(nbext)
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/site-packages/jupyter_core/utils/__init__.py", line 13, in ensure_dir_exists
os.makedirs(path, mode=mode)
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/os.py", line 210, in makedirs
makedirs(head, mode, exist_ok)
File "/home/sacha/miniconda3/envs/bioinfo/lib/python3.6/os.py", line 220, in makedirs
mkdir(name, mode)
PermissionError: [Errno 13] Permission denied: '/usr/local/share/jupyter'