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g2nb / igv-jupyter

Extension for Jupyter which integrates igv.js
MIT License
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jupyter labextension visualization

readme

igv Jupyter Extension

Binder

igv-jupyter is tool for JupyterLab which wraps igv.js by way of igv-notebook, and which integrates with g2nb. With this tool you can render IGV in a cell and call its API from a user-friendly web form in the notebook. Track data can be loaded from local or remote URLs, or supplied directly.

For programmatic access to igv.js in a Jupyter notebook, see igv-notebook.

Installation

Requirements:

pip install igv-jupyter