How to use other fasta file as the reference

g2nb / igv-jupyter

Extension for Jupyter which integrates igv.js

MIT License

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How to use other fasta file as the reference #34

Closed Sotdo closed 3 years ago

Sotdo commented 4 years ago

Hi,

I want to know if igv-jupyter supports using other fasta file as the reference? For example, I have a customed reference file, can I use it as the reference?

If it can be done, how can I make it?

Thanks

jrobinso commented 4 years ago

Use a "reference" object instead of a "genome" object during initialization. As pointed out in the readme configuration is described in the igv.js wiki. The reference object is described here: https://github.com/igvteam/igv.js/wiki/Reference-Genome