search

g2nb / igv-jupyter

Extension for Jupyter which integrates igv.js
MIT License
154 stars 13 forks source link

`.show()` produces no output #43

Closed jamesbaye closed 3 years ago

jamesbaye commented 3 years ago

Hi,

I am trying igv-jupyter for the first time, but am getting no output in jupyter-lab.

Install was performed as follows:

conda create -n igv python=3 ipykernel
python -m ipykernel install --user
conda activate igv
pip install igv-jupyter
jupyter serverextension enable --py igv --sys-prefix
jupyter labextension enable --py igv --sys-prefix
jupyter nbextension install --py igv --sys-prefix
jupyter nbextension enable --py igv --sys-prefix

All commands run without errors except jupyter labextension enable --py igv --sys-prefix which returns jupyter-labextension: error: unrecognized arguments: --sys-prefix.

I tried some variations of the command but none have solved the issue: jupyter labextension enable --py igv, jupyter labextension enable igv.

jupyter-lab version is 3.0.16.

jamesbaye commented 3 years ago

Oh, got it... when I launch jupyter-lab from the igv conda environment it works (was launching jupyter-lab from the base environment).