Problems loading GTF file

[sagnikbanerjee15]

Hello,

I am using the following code to load a gtf file but nothing gets loaded. Could you please look into it?

track_list = [
            {
                "name": "HA",
                "url": "HA.gtf",
                "format": "gff",
                "type": "annotation",
                "indexed": False
            }
        ]

b = igv.Browser( 
    {"reference": {
        "id": "ref",
        "fastaURL": "genome.fasta",
        "indexed": False,
        "tracks": track_list
    }}
 )

b.show()

But once I load it manually, I can see the features

Thank you.

[sagnikbanerjee15]

I figured the error. The gtf file was empty.

[jrobinso]

Also, if it's a gtf file the format should be "gtf", not "gff".

On Sun, Jan 16, 2022 at 11:46 AM Sagnik Banerjee @.***> wrote:

Closed #48 https://github.com/igvteam/igv-jupyter/issues/48.

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