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ga4gh
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Get-Started-with-GA4GH-APIs
ISMB 2022 tutorial on FASP and Starter Kit
Apache License 2.0
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Bump requests from 2.31.0 to 2.32.0
#51
dependabot[bot]
opened
3 months ago
0
Updated with SQL tips and addressing Andys feedback
#50
Chen2x
closed
1 year ago
0
updates for data connect session
#48
Chen2x
closed
1 year ago
0
Bump requests from 2.27.1 to 2.31.0
#45
dependabot[bot]
closed
1 year ago
0
Rename the repo
#44
yash-puligundla
closed
1 year ago
2
Replace the URL to DNAstack's decommissioned or soon-to-be-decommissioned data connect services
#43
shiroyuki
closed
10 months ago
6
Add descriptive logs to starter kits
#42
yash-puligundla
opened
2 years ago
0
Passport example does not match DRS spec
#41
ianfore
opened
2 years ago
0
Notes/Feedback from Dry Part - sessions 2, 3
#40
yash-puligundla
closed
2 years ago
3
The example task on WES should run faster
#39
yash-puligundla
closed
2 years ago
1
Add Environment Set up instructions for sessions 2 and 3
#38
yash-puligundla
closed
2 years ago
2
Starter kit DRS does not support /objects/<drs_id>/access/<access_id>
#37
ianfore
opened
2 years ago
1
DRS on port 5000 won't start on OS X 12.2
#36
ianfore
closed
2 years ago
2
17 drs ids for the tutorial
#35
ianfore
closed
2 years ago
5
Docker desktop link on sessions starterkit readme points to docker compose
#34
ianfore
closed
2 years ago
7
Is "mailslurper" being used in current design of Starter Kits Part 2 session
#33
yash-puligundla
closed
2 years ago
1
Add Cromwell to starter kit WES
#32
yash-puligundla
opened
2 years ago
0
Issue encountered using FASP package in Jupyter
#31
ianfore
closed
2 years ago
2
Data Connect query only fails
#30
ianfore
closed
2 years ago
4
Part_1_DRS_WES low coverage files missing?
#29
ianfore
closed
2 years ago
3
Fixes for session 2
#28
ianfore
closed
2 years ago
0
Fixes for session 2 samtools view via WES
#27
ianfore
closed
2 years ago
0
Check usage of SRA BiqQuery tables in DataConnect
#26
ianfore
opened
2 years ago
0
Start containers for session 2 using Docker compose
#25
ianfore
closed
2 years ago
2
Yp final draft
#24
yash-puligundla
closed
2 years ago
0
clean up
#23
yash-puligundla
closed
2 years ago
0
Rename and restructure sessions 4 & 5
#22
yash-puligundla
closed
2 years ago
0
WES docker does not resolve drs url
#21
yash-puligundla
closed
2 years ago
0
Fix GET /runs endpoint in WES
#20
yash-puligundla
closed
2 years ago
0
Remove trailing spaces in copied passport
#19
yash-puligundla
closed
2 years ago
1
Clarifications for session 4
#18
yash-puligundla
closed
2 years ago
0
DRS ids for the tutorial
#17
ianfore
closed
2 years ago
2
Clarifications for session 5
#16
yash-puligundla
closed
2 years ago
10
Documentation preparation steps for Python environment in "Preparation" section
#15
jb-adams
closed
2 years ago
1
update data connect docker image version
#14
yash-puligundla
closed
2 years ago
0
Session 5: Commands/Scripts to add custom visas to the broker
#13
jb-adams
closed
2 years ago
1
Session 5: Add Passport services to docker-compose
#12
jb-adams
closed
2 years ago
3
Session 5: Generate DRS Controlled Access dataset via script
#11
jb-adams
closed
2 years ago
0
Add service-info endpoint call to session 5
#10
yash-puligundla
closed
2 years ago
0
Yp add data connect setup and use
#9
yash-puligundla
closed
2 years ago
0
Session 4: Script to populate local starter kit DRS with test dataset DRS objects
#8
jb-adams
closed
2 years ago
0
Presenter steps to prepare datasets and external services prior to tutorial
#7
jb-adams
closed
2 years ago
0
Session 5 - DRS and Passports
#6
jb-adams
closed
2 years ago
0
Session 5 - Set up passport services, researcher registers for visas
#5
jb-adams
closed
2 years ago
2
Session 5 - Data Connect setup and use
#4
jb-adams
closed
2 years ago
0
Session 4 - WES setup and workflow execution
#3
jb-adams
closed
2 years ago
3
Session 4 - DRS setup and exploration
#2
jb-adams
closed
2 years ago
2
Presenter setup steps
#1
jb-adams
closed
2 years ago
1