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ga4gh
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benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
Apache License 2.0
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CalledProcessError
#33
gmykim
opened
3 years ago
0
Bump jinja2 from 2.8 to 2.11.3 in /reporting/basic
#32
dependabot[bot]
opened
3 years ago
0
Add metadata to VCF-I header
#31
jdidion
opened
6 years ago
0
Benchmarking my dataset
#30
raman91
opened
6 years ago
2
Truth set high-confidence regions and shiftable indels
#29
Lenbok
opened
7 years ago
2
New app and report
#28
pkrusche
closed
7 years ago
0
GRCh38 / hg38 stratification BED files
#27
blmoore
opened
7 years ago
7
Fix resources link
#26
tfmorris
closed
7 years ago
0
Fix link for stratification bed files
#25
tfmorris
closed
7 years ago
1
Fix for #23 - Updates link
#24
andrewjesaitis
closed
7 years ago
1
Broken link in docs
#23
ghost
closed
7 years ago
1
Update to work with hap.py 0.3.5 and tools submodules version bump
#22
pkrusche
closed
8 years ago
0
Add truthset descriptions
#21
pkrusche
closed
8 years ago
0
Add file with brief descriptions of stratification bed files
#20
jzook
closed
8 years ago
0
Show allele-level derivation of BD from BK match status
#19
Lenbok
closed
8 years ago
0
Add TSV index for stratification files
#18
pkrusche
closed
8 years ago
0
With reporting
#17
pkrusche
closed
8 years ago
0
Representing and benchmarking variant calls on X, Y, and MT
#16
jzook
closed
8 years ago
2
Standardizing performance metrics output file
#15
jzook
opened
8 years ago
4
#11 clarify confident call region intersection
#14
pkrusche
closed
8 years ago
0
Records in intermediate VCF format
#13
bioinformed
opened
8 years ago
3
Proposed clarification of BK and BD #4
#12
pkrusche
closed
8 years ago
2
Comparison around confident region boundaries
#11
Lenbok
closed
8 years ago
11
Add links to datasets for benchmarking?
#10
jzook
closed
7 years ago
5
Clarify the "additional information" FORMAT attribute, and rename
#9
Lenbok
closed
8 years ago
1
Proposed fix for #5
#8
pkrusche
closed
8 years ago
3
Can we call a "superlocus" a "window"?
#7
ghost
closed
8 years ago
5
Adding additional pointers and descriptions for the tools page
#6
ghost
closed
8 years ago
0
Intermediate VCF, SUPERLOCUS_ID
#5
Lenbok
closed
8 years ago
7
Intermediate VCF, decision sub-types (BK)
#4
Lenbok
closed
8 years ago
30
Intermediate VCF, what is BT field for?
#3
Lenbok
closed
8 years ago
1
Intermediate VCF, BD clarification
#2
Lenbok
closed
8 years ago
1
Simply renaming index.md to Readme.md
#1
ghost
closed
8 years ago
0