Plot gadget3 model output using ggplot2. R package version 0.3.0
The gadgetplots package produces diagnostics graphics for gadget3 using ggplot2. The package replaces the plotting capabilities of Rgadget package which was designed to work with gadget2.
The gadgetplots is not available on CRAN yet. Use the devtools or remotes packages to install directly from GitHub:
# install.packages("remotes")
remotes::install_github("gadget-framework/gadgetplots")See the function reference for a detailed list of functions and documentation on how to use them.
The
make_html()
function generates a single html
file
out of
gadgetutils::g3_fit()
output that contains key model diagnostics. Further, the package
produces plots in four categories:
1) plot_*() functions plot gadget model output generated using
gadgetutils::g3_fit().
These functions have a generic shorthand, the
plot(),
with param argument specifying the type of plot.
2) dplot_*() functions plot gadget model input data generated
using mfdb,
gadgetutils::g3_data()
or
gadgetutils::add_g3_attributes()
functions.
3) the g3d_plot() function plots data directly from a gadget
model object.
4) g3plot_* functions plot gadget suitability (selectivity)
functions.
The package is under an active development together with gadget3 framework. Please report bugs and write feature requests under Issues.