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ganlab
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GALA
Long-reads Gap-free Chromosome-scale Assembler
MIT License
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Is the input genome contig version or scaffold (Hic) version
#34
YouxinZhao
opened
3 months ago
0
Can it be installed through Conda
#33
ZKYthli
opened
6 months ago
1
one of the comparison file is empty
#32
WeiCSong
opened
7 months ago
0
it si too slow by running 'bwa mem -x ont2d misassembly-free draft long-reads'
#31
caixu0518
opened
1 year ago
0
how to deal with the ccm results
#30
lilinzhou
opened
1 year ago
2
Cleaned up and blocked-by-step GALA code ; many additional options
#29
JohnUrban
opened
1 year ago
0
Multithreading option in GALA
#28
arslan9732
opened
1 year ago
0
minimap commands in the auto-generated draft_comp.sh file resulting in usage errors
#27
JohnUrban
opened
1 year ago
3
Syntax confusion regarding sequencing_platform
#26
JohnUrban
opened
1 year ago
2
TabError: inconsistent use of tabs and spaces in indentation
#25
JohnUrban
opened
1 year ago
1
The single command mode
#24
wushyer
opened
2 years ago
3
strange format of 'draf_comp.sh' generated by comp
#23
zhaotao1987
opened
2 years ago
1
Possible to maintain haplotypes?
#22
zhaotao1987
opened
2 years ago
1
Parameters for multi-threads?
#21
zhaotao1987
closed
2 years ago
1
How many draft assemblies should I need?
#20
xiekunwhy
closed
2 years ago
1
How to deal with the same reads’ name?
#19
wzhangahas
closed
3 years ago
3
how to prepare ref fasta file
#18
wzhangahas
closed
3 years ago
3
The amount of data eventually generated
#17
haiyun-fan
closed
3 years ago
1
How to assemble gap-free chomosome by gala according hifi and ONT data?
#16
wzhangahas
closed
3 years ago
4
Can we replace bwa to minimap2?
#15
shig913
closed
3 years ago
1
Calculation time of bwa step
#14
kazuaki0816
closed
3 years ago
1
I want to try CHM13 assembly
#13
zhoudreames
closed
3 years ago
3
How to run Gala
#12
AstrMary
closed
3 years ago
2
newgenome throws ValueError: invalid literal for int() with base 10
#11
fog-bank
closed
3 years ago
2
bwa still running but no new output ?
#10
longzhangnation
closed
3 years ago
1
How to get misassembly-free draft
#9
lyrk50
closed
3 years ago
7
CCM output
#8
johnomics
closed
4 years ago
4
KeyError: 'contig_2601_awad'
#7
sadikmu
closed
3 years ago
4
Problem ccm
#6
qhelleu
closed
4 years ago
12
Single Command Mode: `KeyError:...
#5
Ural-Yunusbaev
closed
4 years ago
2
Computational requirements and time
#4
Tom-Jenkins
closed
4 years ago
3
Step-by-Step Mode: newgenome: cut_file error
#3
Ural-Yunusbaev
closed
3 years ago
8
Py2.7
#2
colindaven
closed
4 years ago
1
Single command error, then issues with individual commands.
#1
Dikaryotic
closed
4 years ago
23