launchcontainers
Launchcontainers is a Python-based tool for automatically launching computing works on HPC or local nodes. It helps you:
- Prepare folder structures and input files automatically
- Backup the input configs for data provenance
- Launching containers in BCBL or DIPC
Currently, launchcontainers works along with anatROIs, RTP-preproc, and RTP2-pipeline.
NEW FEATURES 0.3.x
Now you can pip install launchcontainers==0.3.22 and use it in the command line!
- Add requests into pyproject.toml, remove version limit to common package such as nibabel and numpy
- Changed rtp/rtp2-preproc multishell option to separateed_shell_files
- Edited lc_config.yaml comment about dask_worker options
- Fixed error message by dask progress (0.3.18)
- launchcontainers --copy_configs "~/path/to/working_directory" will copy the corresponding config files to your specified directory!
- We updated the lc_config.yaml for RTP2-pipelines, please have a look!
check the [How to use]() for more information