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gbouras13
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hybracter
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
MIT License
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8
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add history and bump version to 0.10.1
#107
gbouras13
closed
1 week ago
1
Fix: Error calling blastx in rule Dnaapler
#106
richardstoeckl
closed
1 week ago
1
container [skip ci]
#105
gbouras13
closed
1 month ago
0
update docs
#104
gbouras13
closed
1 month ago
1
V0.10.0 flye extra parama
#103
gbouras13
closed
1 month ago
1
Unicycler not found error
#102
schmittel
opened
1 month ago
1
[Feature request] Add extra flags for running Flye
#101
pdobbler
closed
1 month ago
3
v0.10.0 - `--bacteria`
#100
gbouras13
closed
1 month ago
1
v0.9.1 - Plassembler env
#99
gbouras13
closed
1 month ago
1
[BUG] - kmc error
#98
suzumar
opened
1 month ago
5
[BUG] Flye does not allow more than 128 threads.
#97
vdejager
opened
1 month ago
1
Fix small typos in README.md
#96
richardstoeckl
closed
1 month ago
1
update container image to v0.9.0
#95
gbouras13
closed
2 months ago
1
v0.9.0 final changes (CI, docs)
#94
gbouras13
closed
2 months ago
1
DNAapler circularization not included in final output
#93
pabloati
opened
2 months ago
3
v0.9.0
#92
gbouras13
closed
2 months ago
0
Update README.md typo
#91
gbouras13
closed
2 months ago
1
[Feature request] Optional automatic genome size estimation
#90
richardstoeckl
closed
2 months ago
4
[Feature request] Add --min_depth in the QC step
#89
llk578496
closed
2 months ago
10
bump container to 0.8.0 [skip ci]
#88
gbouras13
closed
2 months ago
0
v0.8.0
#87
gbouras13
closed
2 months ago
1
Add error checking if Flye assembles nothing
#86
gbouras13
opened
3 months ago
0
Mamba not detected with snakemake
#85
dinmoz
opened
3 months ago
10
add latest medaka models
#84
vdejager
closed
2 months ago
6
Can this program be run on an external hard drive?
#83
JavierFFavieres
opened
4 months ago
4
[BUG] Problem in coverage information
#82
CorentinEscobar
closed
4 months ago
2
[Feature request] Automatic Dnaapler fall-back or adjustable Dnaapler --evalue param
#81
richardstoeckl
closed
2 months ago
10
[BUG] hybracter install problem
#80
gaworj
closed
4 months ago
2
Add citation
#79
gbouras13
closed
6 months ago
0
Error: the assembly_1 and assembly_2 assemblies need to contain the same number of sequences
#78
rukjis
opened
6 months ago
1
[Feature request]
#77
oschwengers
opened
6 months ago
0
New parameter pointing to the raw data
#76
oschwengers
closed
2 months ago
3
update citaion pypolca
#75
gbouras13
closed
6 months ago
0
[BUG] No plasmid in final output
#74
CorentinEscobar
closed
7 months ago
4
Dev
#73
gbouras13
closed
7 months ago
0
update docs with colab [skip ci]
#72
gbouras13
closed
7 months ago
0
Update medaka models to include 4.3.0 models
#71
samuelmontgomery
closed
2 months ago
2
0.7.3
#70
gbouras13
closed
7 months ago
0
update readme [skip ci]
#69
gbouras13
closed
7 months ago
0
update readme [skip ci]
#68
gbouras13
closed
7 months ago
0
0.7.2
#67
gbouras13
closed
7 months ago
0
v0.7.2 fix circular=true in chrom
#66
gbouras13
closed
7 months ago
0
Update docs
#65
gbouras13
closed
7 months ago
0
How contamination-sensitive is hybracter?
#64
stas-malavin
opened
8 months ago
2
Failed to run medaka consensus
#63
monty357penguin
closed
8 months ago
2
Error in rule medaka_incomplete
#62
damientully
opened
8 months ago
9
0.7.1
#61
gbouras13
closed
8 months ago
0
[Feature request] Addding the option to write the database to a specific directory
#60
npbhavya
closed
8 months ago
2
[BUG] Possible to have hybracter install its own copy of mamba?
#59
rzelle-lallemand
closed
8 months ago
4
fix readme etc
#58
gbouras13
closed
8 months ago
0
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