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gbouras13
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hybracter
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
MIT License
108
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8
forks
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v0.7.0
#57
gbouras13
closed
8 months ago
1
[BUG] Medaka failure on MacOS
#56
andreagp96
closed
9 months ago
2
snakemake incompatible to the provided slurm profile
#55
zhanxw
opened
9 months ago
4
Error calling blastx
#54
kuzman1306
closed
9 months ago
10
Update README.md
#53
biobrad
closed
9 months ago
2
Update index.md
#52
biobrad
closed
9 months ago
0
[BUG] Pipeline breaks when '--skip_qc' is chosen
#51
wanyuac
closed
8 months ago
3
v0.6.0
#50
gbouras13
closed
10 months ago
0
[BUG] Polypolish failed in the test run
#49
wanyuac
closed
10 months ago
3
[Feature request] Download all medaka models with test-long (and test-hybrid)?
#48
lxsteiner
closed
10 months ago
1
add some more dependencie troubleshooting docs4 [skip ci]
#47
gbouras13
closed
10 months ago
0
Add some docs for install issues [skip ci]
#46
gbouras13
closed
10 months ago
0
[plassembler long] canu installed, but canu not found
#45
lxsteiner
closed
10 months ago
10
[BUG] mash not found
#44
CorentinEscobar
closed
10 months ago
12
fix some typos [skip ci]
#43
gbouras13
closed
10 months ago
0
fix some typos
#42
gbouras13
closed
10 months ago
0
v0.5.0
#41
gbouras13
closed
10 months ago
0
[BUG] Add required channels to install instructions/documentation
#40
ammaraziz
closed
10 months ago
2
Update citation and docs [skip ci]
#39
gbouras13
closed
11 months ago
0
allow specifying phage in dnaapler (or other dnaaper arguments for the choice of start gene)
#38
splaisan
closed
10 months ago
1
Fix `test-hybrid` and `test-long` typos [skip ci]
#37
gbouras13
closed
11 months ago
1
DOC: typo for test commands
#36
splaisan
closed
11 months ago
1
v0.4.1
#35
gbouras13
closed
12 months ago
0
add links to benchmarking [skip ci]
#34
gbouras13
closed
1 year ago
0
benchmarking tables [skip ci]
#33
gbouras13
closed
1 year ago
0
Benchmarking [skip ci]
#32
gbouras13
closed
1 year ago
0
fix docs final [skip ci]
#31
gbouras13
closed
1 year ago
0
fix docs [skip ci]
#30
gbouras13
closed
1 year ago
0
medics config [skip ci]
#29
gbouras13
closed
1 year ago
0
Update docs to include config [skip ci]
#28
gbouras13
closed
1 year ago
0
Dev
#27
gbouras13
closed
1 year ago
0
0.4.0
#26
gbouras13
closed
1 year ago
1
Fix typo in README.md
#25
oschwengers
closed
1 year ago
2
0.3.0
#24
gbouras13
closed
1 year ago
0
v0.3.0
#23
gbouras13
closed
1 year ago
0
0.2.1
#22
gbouras13
closed
1 year ago
1
v0.2.0
#21
gbouras13
closed
1 year ago
1
fix docs
#20
gbouras13
closed
1 year ago
0
v0.2.0
#19
gbouras13
closed
1 year ago
0
Dnaapler custom DB
#18
simone-pignotti
closed
1 year ago
3
Fix #16 fastp output redirection and threads
#17
simone-pignotti
closed
1 year ago
3
fastp outputs in current working directory
#16
simone-pignotti
closed
1 year ago
2
v 0.1.2
#15
gbouras13
closed
1 year ago
1
Fix #13 - bwa index concurrency issue
#14
simone-pignotti
closed
1 year ago
1
BWA index bug + missing folder for ALE sam outputs
#13
simone-pignotti
closed
1 year ago
1
remove some old DS stores
#12
gbouras13
closed
1 year ago
0
history [skip ci]
#11
gbouras13
closed
1 year ago
0
Fixes #9
#10
gbouras13
closed
1 year ago
1
Wrong variable name
#9
simone-pignotti
closed
1 year ago
3
add pypi badges
#8
gbouras13
closed
1 year ago
0
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