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gelles-brandeis
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tapqir
Bayesian analysis of co-localization single-molecule microscopy image data.
Apache License 2.0
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COSMOS fitting seems to depend on the number of channels used for processing
#423
jc-brandeis
opened
11 months ago
1
dwell time post analysis errors
#422
jc-brandeis
opened
1 year ago
2
Optimize data fetching
#421
ordabayevy
closed
1 year ago
0
Trying to run 3-state (2 spot states) HMM data - getting CUDA memory error and "Iteration started with a new seed" warnings
#420
zhoudan-brandeis
opened
1 year ago
4
Add `compute_params` method
#419
ordabayevy
closed
1 year ago
0
Rerun the new version of black on the repo
#418
ordabayevy
closed
1 year ago
0
Save dwelltime intervals in matlab format
#417
ordabayevy
closed
1 year ago
0
How to read .pkl files (produced by tapqir) in matlab
#416
ordabayevy
closed
1 year ago
0
Make dwelltime analysis faster
#413
ordabayevy
closed
1 year ago
0
post analysis not completing
#412
nidaf123
closed
1 year ago
4
Fix ttb bug
#411
ordabayevy
closed
1 year ago
0
Add cumulative to axis label
#410
ordabayevy
closed
1 year ago
0
Fix dwelltime analysis for comsos+hmm model output
#409
ordabayevy
closed
1 year ago
0
Unable to run dwell time analysis with the new posterior sample option
#408
zhoudan-brandeis
closed
1 year ago
1
Option to run post-analysis either on GPU or CPU
#407
ordabayevy
closed
1 year ago
0
Rename dwelltime analysis output files
#406
ordabayevy
closed
1 year ago
0
Exclude masked AOIs from post analyses and rastergram plots
#405
ordabayevy
closed
1 year ago
0
Add dye color labels in the GUI
#404
ordabayevy
closed
1 year ago
0
Save time intervals
#403
ordabayevy
closed
1 year ago
0
Save values of posterior-sampled dwell times
#402
gelles-brandeis
closed
1 year ago
1
ttb parameter in matlab output
#401
jc-brandeis
closed
1 year ago
3
Update windows.rst
#400
gelles-brandeis
closed
1 year ago
0
Fix fetch device
#399
ordabayevy
closed
1 year ago
0
Fix GPU error
#398
ordabayevy
closed
1 year ago
0
Error trying to fit data to Cosmos-HMM model
#396
zhoudan-brandeis
closed
1 year ago
9
Fix colab progressbar in post analysis
#394
ordabayevy
closed
2 years ago
0
mark static images in colab tutorial
#393
gelles-brandeis
opened
2 years ago
0
move colab tutorial
#392
ordabayevy
closed
2 years ago
0
Edit Colab tutorial
#391
ordabayevy
closed
2 years ago
0
Update colab.rst
#390
gelles-brandeis
closed
2 years ago
0
Update info.rst
#389
gelles-brandeis
closed
2 years ago
0
Fix glimpse view multiple color channels
#388
ordabayevy
closed
2 years ago
0
view results window - channel key
#387
jc-brandeis
closed
1 year ago
0
view results - wrong field of view images display
#386
jc-brandeis
closed
2 years ago
0
view results - sliders for adjusting brightness and contrast of AOI images
#385
jc-brandeis
opened
2 years ago
0
Save time-to-first-binding data points
#384
ordabayevy
closed
2 years ago
0
Dwelltime progress bar
#383
ordabayevy
closed
2 years ago
0
Add progress bar to ttfb and dwelltime commands
#382
ordabayevy
closed
2 years ago
0
SNR per channel
#381
ordabayevy
closed
2 years ago
0
Fix output filenames
#380
ordabayevy
closed
2 years ago
0
post analysis: same names are used for saving figures (png) and parameters
#379
jc-brandeis
closed
2 years ago
1
post analysis: time to first binding (cosmos-hmm)
#378
jc-brandeis
opened
2 years ago
0
SNR for multiple channel
#376
gelles-brandeis
closed
2 years ago
0
Fix #374
#375
ordabayevy
closed
2 years ago
0
errors during colab run
#374
larryfj
closed
2 years ago
2
Fix pi_mean tensorboard bug
#373
ordabayevy
closed
2 years ago
0
time to first binding - post analysis
#372
jc-brandeis
closed
2 years ago
2
dwell time - post analysis
#371
jc-brandeis
closed
2 years ago
2
python 3.8 vs python 3.9
#369
jc-brandeis
opened
2 years ago
0
Bug fixes
#368
ordabayevy
closed
2 years ago
0
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