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minerva
BSD 3-Clause "New" or "Revised" License
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Update minerva to handle “maximal-causal-chain-length” and “display-as-pathway-override”
#448
kltm
opened
2 years ago
4
Bump log4j-core from 2.16.0 to 2.17.1
#446
dependabot[bot]
closed
2 years ago
3
Bump log4j-core from 2.16.0 to 2.17.0
#445
dependabot[bot]
closed
2 years ago
1
Add log4j xml config
#444
balhoff
closed
2 years ago
2
Add log4j-core; update to log4j 2.16.0
#443
balhoff
closed
2 years ago
1
Catch minerva version up to deal with security issues
#442
kltm
closed
2 years ago
9
Update ant, junit, commons-io.
#441
balhoff
closed
2 years ago
0
Log4j PR for testing on dev
#440
balhoff
closed
2 years ago
0
Use log4j 2.16.0.
#439
balhoff
closed
2 years ago
2
Remove 'has participant' as valid extension relation
#438
balhoff
closed
2 years ago
1
Incorrect evidence on inferred annotations based on ontology term logical definitions
#437
vanaukenk
opened
2 years ago
1
Filter out root MF annotations if any other MF annotation exists for the GP.
#436
balhoff
closed
3 years ago
0
Retrieve creation date from evidence node.
#435
balhoff
closed
3 years ago
0
Individuals with type = complement does not bring root types
#434
tmushayahama
closed
2 years ago
7
Fixes for handling negations in ShEx validation
#433
balhoff
closed
3 years ago
0
parallel model importing may not be safe
#432
balhoff
opened
3 years ago
4
Add Uberon life cycle stage and PO plant structure development stage to root types list.
#431
balhoff
closed
3 years ago
0
Model search should find UniProt IDs in REACTO classes
#430
dustine32
opened
3 years ago
3
GPAD export needs an ontojournal.
#429
balhoff
closed
3 years ago
0
Add Root Types for WBls:0000075 ZFS:0100000
#428
tmushayahama
closed
2 years ago
7
Exclude annotations to regulated terms
#427
balhoff
closed
3 years ago
0
Should located_in be considered redundant with is_active_in?
#426
ukemi
opened
3 years ago
14
Remove the noctua GPAD file has_participant annotation extensions
#425
ukemi
closed
2 years ago
5
Filter the Noctua GPAD outputs for 'duplicate' annotations (new tool)
#424
ukemi
opened
3 years ago
7
Don’t output import-date in GPAD.
#423
balhoff
closed
3 years ago
0
Allow skipping ShEx in --validate-go-cams when --shex is omitted
#422
dustine32
closed
3 years ago
0
Update master branch from dev
#421
balhoff
closed
3 years ago
1
Generate species GPADs using the GPI files
#420
ukemi
closed
2 years ago
6
Update minerva search api for handling date information
#419
vanaukenk
closed
2 years ago
5
Don’t filter out GPAD annotations for 'do not annotate' violations.
#418
balhoff
closed
3 years ago
0
Do not filter out GPAD annotations for 'do not annotate' violations
#417
balhoff
closed
2 years ago
1
Merge latest
#416
balhoff
closed
3 years ago
0
Retrieve created and imported dates from axiom annotations.
#415
balhoff
closed
3 years ago
0
Tweak test to work with changed data.
#414
balhoff
closed
3 years ago
0
Add 'existence starts and ends during' to allowed annotation extension relations
#413
balhoff
closed
3 years ago
3
Annotation missing from the MGI GPAD
#412
ukemi
closed
3 years ago
12
Creation dates are missing from GPAD outputs
#411
ukemi
closed
3 years ago
3
Some PRO annotations are missing from the GPAD
#410
ukemi
closed
3 years ago
12
Allow both root MF and BP if different OWL instances.
#409
balhoff
closed
3 years ago
0
Do PomBase identifiers have root type values in minerva?
#408
vanaukenk
closed
2 years ago
9
Add relations to allowed extensions
#407
balhoff
closed
3 years ago
0
Add two new annotation extension relations to gpad-extensions.rq
#406
vanaukenk
closed
2 years ago
18
Suppress UBERON annotation extensions when an EMAPA structure is present.
#405
balhoff
closed
3 years ago
0
Don't create root MF annotation when root BP annotation is present
#404
balhoff
closed
3 years ago
0
Tests take too long
#403
balhoff
opened
3 years ago
0
Test with github actions
#402
balhoff
closed
3 years ago
0
Export creation-date and modification-date annotation properties in GPAD.
#401
balhoff
closed
3 years ago
3
Align dev and master
#400
balhoff
closed
3 years ago
3
NullPointerException in ShexValidator when trying to report/handle ShEx non-conformant NOT individuals
#399
dustine32
closed
3 years ago
1
When multiple 'withs' are used in a single Function companion import, they get out put as separate annotations
#398
ukemi
opened
3 years ago
3
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