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geneontology
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touchup
for keeping the PAINT GAF files up to date
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Any reason not to ARCHIVE this repo?
#58
kltm
opened
3 years ago
0
Handle annotations of experiments, but made using an obsolete term
#57
selewis
closed
7 years ago
0
Add method to collect all disallowed taxa for a given GO class
#56
selewis
closed
7 years ago
0
adding travis tests
#55
cmungall
closed
8 years ago
0
Configure repository using standard maven layout and add junit tests
#54
cmungall
opened
8 years ago
0
Ensembl links not working in PAINT 2.0-beta19
#53
pgaudet
closed
8 years ago
2
TAIR ID not recognized ?
#52
pgaudet
closed
8 years ago
2
Taxon checks deactivated ?
#51
pgaudet
closed
8 years ago
1
Experimental annotations to obsolete terms
#50
selewis
closed
8 years ago
1
Missing symbol in GAF file
#49
selewis
closed
8 years ago
1
Record Panther version in GAF file
#48
pgaudet
closed
8 years ago
1
If a PTN node looses annotations, provide protein ID for that former annotation
#47
pgaudet
closed
8 years ago
1
Add modal feature to common logic module of PAINT
#46
pgaudet
opened
8 years ago
0
IBAs from HTP papers should be flagged as 'dubious' but not be removed
#45
pgaudet
opened
8 years ago
1
Correct Sources for RefGenome and GO Central
#44
pgaudet
closed
8 years ago
1
Create directory automatically with family name
#43
selewis
closed
8 years ago
3
PAINT file contents.
#42
monicacecilia
closed
8 years ago
1
more issues with "duplicate notes when splitting families" (see #38)
#41
krchristie
opened
8 years ago
0
Species problem in PANTHER v10
#40
selewis
closed
8 years ago
3
invalid sources ("RefGenome" & "GO Central") from PAINT
#39
krchristie
closed
8 years ago
2
duplicate notes when splitting families
#38
krchristie
closed
8 years ago
3
Empty gaf file when it's been viewed
#37
selewis
closed
8 years ago
2
Disable prevention of annotations that has NOT
#36
pgaudet
closed
7 years ago
1
Check that all qualifiers got migrated during PAINT 9 to 10 update
#35
pgaudet
closed
8 years ago
5
Violation of taxon constraints should give a warning with a pop up box of choices of actions
#34
pgaudet
closed
8 years ago
3
Regulation propagation rules
#33
pgaudet
closed
7 years ago
13
NOT annotation is not migrated when a PTN is moved to a new family
#32
huaiyumi
closed
8 years ago
2
Remove restriction for 'Do not manually annotate'
#31
pgaudet
closed
7 years ago
14
IBD annotations to terms and their parents should be saved in the PAINT GAF
#30
pgaudet
closed
8 years ago
4
Title bar in PAINT 2.0
#29
huaiyumi
closed
8 years ago
6
Qualifiers are not loaded in PAINT2.0
#28
huaiyumi
closed
8 years ago
3
File structure change in PAINT2.0
#27
huaiyumi
closed
8 years ago
9
IRD NOT is incorrectly propagated to leaf sequences with IBA
#26
huaiyumi
closed
8 years ago
4
Name field missing in some paint_other entries
#25
cmungall
closed
8 years ago
1
New evidence code ?
#24
selewis
closed
8 years ago
1
Loaded PAINT annotations appear to be incorrect
#23
kltm
closed
7 years ago
4
Bizarre gene name inserted into PTHR10183 Pcalp
#22
cmungall
closed
8 years ago
1
Both more general term & 'NOT' of a specific term on the same node
#21
selewis
opened
9 years ago
1
Add commenting for individual annotator actions
#20
selewis
opened
9 years ago
0
reimplementing block
#19
selewis
opened
9 years ago
0
PAINT needs to treat IKRs coming from sources other than GO_Central need to be treated as other EXP annotations
#18
pgaudet
closed
8 years ago
4
mismatch between mysql data and golr
#17
selewis
closed
9 years ago
1
Annotation error reported on a leaf - what's up with that dude?
#16
selewis
closed
9 years ago
1
Why is reproduction direct annotation declined
#15
selewis
closed
9 years ago
1
Update IDs to use latest reference proteome
#14
cmungall
opened
9 years ago
7
add 'with' information
#13
selewis
closed
8 years ago
0
Follow relationship path for regulates
#12
selewis
closed
8 years ago
1
Transfer this repo to geneontology org
#11
cmungall
closed
9 years ago
6
'GO Central' still remains in various files
#10
cmungall
closed
9 years ago
7
Incorrect qualifier in PAINT gafs
#9
hdrabkin
closed
9 years ago
1
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