geneontology touchup issues

geneontology / touchup

for keeping the PAINT GAF files up to date

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issues

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Any reason not to ARCHIVE this repo?

#58 kltm opened 3 years ago
0
Handle annotations of experiments, but made using an obsolete term

#57 selewis closed 7 years ago
0
Add method to collect all disallowed taxa for a given GO class

#56 selewis closed 7 years ago
0
adding travis tests

#55 cmungall closed 8 years ago
0
Configure repository using standard maven layout and add junit tests

#54 cmungall opened 8 years ago
0
Ensembl links not working in PAINT 2.0-beta19

#53 pgaudet closed 8 years ago
2
TAIR ID not recognized ?

#52 pgaudet closed 8 years ago
2
Taxon checks deactivated ?

#51 pgaudet closed 8 years ago
1
Experimental annotations to obsolete terms

#50 selewis closed 8 years ago
1
Missing symbol in GAF file

#49 selewis closed 8 years ago
1
Record Panther version in GAF file

#48 pgaudet closed 8 years ago
1
If a PTN node looses annotations, provide protein ID for that former annotation

#47 pgaudet closed 8 years ago
1
Add modal feature to common logic module of PAINT

#46 pgaudet opened 8 years ago
0
IBAs from HTP papers should be flagged as 'dubious' but not be removed

#45 pgaudet opened 8 years ago
1
Correct Sources for RefGenome and GO Central

#44 pgaudet closed 8 years ago
1
Create directory automatically with family name

#43 selewis closed 8 years ago
3
PAINT file contents.

#42 monicacecilia closed 8 years ago
1
more issues with "duplicate notes when splitting families" (see #38)

#41 krchristie opened 8 years ago
0
Species problem in PANTHER v10

#40 selewis closed 8 years ago
3
invalid sources ("RefGenome" & "GO Central") from PAINT

#39 krchristie closed 8 years ago
2
duplicate notes when splitting families

#38 krchristie closed 8 years ago
3
Empty gaf file when it's been viewed

#37 selewis closed 8 years ago
2
Disable prevention of annotations that has NOT

#36 pgaudet closed 7 years ago
1
Check that all qualifiers got migrated during PAINT 9 to 10 update

#35 pgaudet closed 8 years ago
5
Violation of taxon constraints should give a warning with a pop up box of choices of actions

#34 pgaudet closed 8 years ago
3
Regulation propagation rules

#33 pgaudet closed 7 years ago
13
NOT annotation is not migrated when a PTN is moved to a new family

#32 huaiyumi closed 8 years ago
2
Remove restriction for 'Do not manually annotate'

#31 pgaudet closed 7 years ago
14
IBD annotations to terms and their parents should be saved in the PAINT GAF

#30 pgaudet closed 8 years ago
4
Title bar in PAINT 2.0

#29 huaiyumi closed 8 years ago
6
Qualifiers are not loaded in PAINT2.0

#28 huaiyumi closed 8 years ago
3
File structure change in PAINT2.0

#27 huaiyumi closed 8 years ago
9
IRD NOT is incorrectly propagated to leaf sequences with IBA

#26 huaiyumi closed 8 years ago
4
Name field missing in some paint_other entries

#25 cmungall closed 8 years ago
1
New evidence code ?

#24 selewis closed 8 years ago
1
Loaded PAINT annotations appear to be incorrect

#23 kltm closed 7 years ago
4
Bizarre gene name inserted into PTHR10183 Pcalp

#22 cmungall closed 8 years ago
1
Both more general term & 'NOT' of a specific term on the same node

#21 selewis opened 9 years ago
1
Add commenting for individual annotator actions

#20 selewis opened 9 years ago
0
reimplementing block

#19 selewis opened 9 years ago
0
PAINT needs to treat IKRs coming from sources other than GO_Central need to be treated as other EXP annotations

#18 pgaudet closed 8 years ago
4
mismatch between mysql data and golr

#17 selewis closed 9 years ago
1
Annotation error reported on a leaf - what's up with that dude?

#16 selewis closed 9 years ago
1
Why is reproduction direct annotation declined

#15 selewis closed 9 years ago
1
Update IDs to use latest reference proteome

#14 cmungall opened 9 years ago
7
add 'with' information

#13 selewis closed 8 years ago
0
Follow relationship path for regulates

#12 selewis closed 8 years ago
1
Transfer this repo to geneontology org

#11 cmungall closed 9 years ago
6
'GO Central' still remains in various files

#10 cmungall closed 9 years ago
7
Incorrect qualifier in PAINT gafs

#9 hdrabkin closed 9 years ago
1