genialis resolwe-bio issues

genialis / resolwe-bio

Bioinformatics pipelines for Resolwe

Apache License 2.0

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Allow filtering variant experiment by sample

#1399 gregorjerse opened 9 hours ago
0
Require Resolwe 41.x

#1398 gregorjerse closed 5 days ago
2
Change ref and alt field types

#1397 marcellevstek closed 5 days ago
0
Bump arriba resource requirements

#1396 zkuralt closed 6 days ago
0
Add filtering Variant by VariantCall and VariantExperiment

#1395 gregorjerse closed 6 days ago
0
Prepare release 59.2.0

#1394 jkokosar closed 4 weeks ago
0
Fix rendering of star_index input field in gene-fusion-calling-arriba workflow

#1393 jkokosar closed 1 month ago
0
Fix failing SRA requests in the geo-import process

#1392 AnzeLovse closed 1 month ago
0
Update the pca process with the functionality from the deprecated pca-beta process

#1391 jkokosar closed 1 month ago
0
Add known fusions file input option

#1390 zkuralt closed 1 month ago
0
Change max char length for REF and ALT fields

#1389 marcellevstek closed 1 month ago
0
Skip downstream/upstream and intergenic variants

#1388 marcellevstek closed 1 month ago
1
Optimize resource usage in BBDuk and FASTQ read import processes

#1387 jkokosar closed 1 month ago
0
Change variant fields type to text & add filter to variant annotations

#1386 gregorjerse closed 1 month ago
0
Replace nan with empty string

#1385 marcellevstek closed 1 month ago
0
Prepare release 59.1.0

#1384 jkokosar closed 1 month ago
0
Bump dbsnp and clinvar fields in Variant model to max length of 150

#1383 jkokosar closed 1 month ago
0
Change variant model annotation field clinical diagnosis max length

#1382 jkokosar closed 1 month ago
0
Fix star.py to correctly handle --chimOutType parameters

#1381 zkuralt closed 2 months ago
0
Change length of annotation and clinical diagnosis fields

#1380 gregorjerse closed 2 months ago
0
Fill NaN values in variant-annotation

#1379 marcellevstek closed 2 months ago
0
Beautify arriba.py and test_arriba.py scripts

#1378 zkuralt closed 2 months ago
0
Fix handling of variant ID values

#1377 marcellevstek closed 2 months ago
0
Change default values of --chimOutType STAR parameter

#1376 zkuralt closed 2 months ago
0
Make changes to ``samtools-mpileup``

#1375 marcellevstek closed 2 months ago
0
Add additional outputs to "gtf-to-bed"

#1374 marcellevstek closed 2 months ago
0
Ensure the sorting of input VCF file in ``variant-annotation`` process

#1373 marcellevstek closed 2 months ago
0
Fix --numberOfProcessors in calculate-bigwig

#1372 marcellevstek closed 2 months ago
1
Fix get_contig_names() fuction

#1371 zkuralt closed 2 months ago
0
Add ``samtools-mpileup-single`` process

#1370 marcellevstek closed 2 months ago
0
Add variant annotation process

#1369 marcellevstek closed 2 months ago
1
Add gtf-to-bed process

#1368 marcellevstek closed 2 months ago
0
Add additional input fields in calculate-bigwig process

#1367 marcellevstek closed 2 months ago
0
Develop a gene-fusion-calling-arriba workflow

#1366 zkuralt closed 1 month ago
0
Prepare release 59.0.0

#1365 romunov closed 2 months ago
1
Fix and add more choices to --chimOutType parameter in STAR

#1364 romunov closed 2 months ago
0
Skip GEO import tests

#1363 romunov closed 3 months ago
0
Bump ``workflow-bbduk-star-qc`` workflow version

#1362 zkuralt closed 3 months ago
0
Implement fusion calling with Arriba

#1361 zkuralt closed 2 months ago
1
Expose variant objects in python processes

#1360 gregorjerse closed 3 months ago
1
Feature/private repo

#1359 gregorjerse opened 3 months ago
0
Modify star.py and bbduk_star.py for fusion calling

#1358 zkuralt closed 3 months ago
0
Remove obsolete processes and scripts

#1357 jkokosar closed 3 months ago
0
Change iteration size in listener for kb models to 10000

#1356 gregorjerse closed 3 months ago
0
Add retries for SRA query in geo-import process

#1355 jkokosar closed 3 months ago
0
Rename field unfiltered_allele_depth on variantcall model to alternative_allele_depth

#1354 jkokosar closed 3 months ago
0
Use partial testing

#1353 gregorjerse closed 3 months ago
0
Add filters by sample to variant objects

#1352 gregorjerse closed 2 months ago
0
Prepare release 58.0.0

#1351 jkokosar closed 4 months ago
0
Add changes to ``pca-beta`` process

#1350 marcellevstek closed 4 months ago
0