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genialis
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resolwe-bio
Bioinformatics pipelines for Resolwe
Apache License 2.0
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Fix coercing the number of threads to int
#1349
romunov
closed
4 months ago
1
Fix coercing the number of threads to int in the ``xengsort-index`` process
#1348
romunov
closed
4 months ago
0
Fix (and modify) the selection of variant data when using mutations-table process
#1347
jkokosar
closed
4 months ago
0
Implement peak calling in Cut & Run workflow
#1346
jkokosar
closed
4 months ago
0
Prepare release 57.0.0
#1345
jkokosar
closed
4 months ago
0
Fix handling of multiple instances of STAR aligner input in the MultiQC process
#1344
jkokosar
closed
5 months ago
0
Use simple_unaccent configuration when generating search vectors
#1343
gregorjerse
closed
5 months ago
0
Fix debug must be set to true when building tests
#1342
gregorjerse
closed
5 months ago
1
Bump dependencies
#1341
gregorjerse
closed
4 months ago
0
Do not run type checks on every pull request
#1340
gregorjerse
closed
5 months ago
0
Support writing variant information from mutations-table process to variants application
#1339
jkokosar
closed
5 months ago
0
Require Resolwe 40.x
#1338
gregorjerse
closed
6 months ago
0
Use the updated version of xengsort tool in processes xengsort-index and xengsort-classify
#1337
jkokosar
closed
6 months ago
1
Add ``pca-beta`` process
#1336
marcellevstek
closed
4 months ago
1
Prepare release 56.0.0
#1335
jkokosar
closed
6 months ago
0
Remove sample annotation functionality from ``geo-import`` process
#1334
marcellevstek
closed
6 months ago
0
Add coverage configuration
#1333
gregorjerse
closed
6 months ago
1
Build (pre)release automatically on tag push
#1332
gregorjerse
closed
6 months ago
0
Prepare release 54.4.0
#1331
jkokosar
closed
7 months ago
0
Use GRCh38.109 annotation database in snpEff
#1330
jkokosar
closed
6 months ago
0
Upgrade PostgreSQL used in tests to version 16
#1329
gregorjerse
closed
7 months ago
0
Rewrite Expression Aggregator process to Python
#1328
jkokosar
closed
7 months ago
0
Remove entity descriptor fields
#1327
gregorjerse
closed
7 months ago
0
Remove processes associated with 10x scRNA-seq
#1326
romunov
closed
7 months ago
2
Rename beta and remove legacy Cut&Run workflow
#1325
romunov
closed
7 months ago
0
Prepare release 55.3.0
#1324
jkokosar
closed
7 months ago
0
Fix handling of large files in ``samtools-depth`` process
#1323
marcellevstek
closed
7 months ago
0
Remove RNA-SeQC from workflows and MultiQC
#1322
marcellevstek
closed
7 months ago
0
Add gene body coverage information to MultiQC
#1321
marcellevstek
closed
7 months ago
0
Add retry for reads prefetch in ``import-sra``
#1320
marcellevstek
closed
7 months ago
0
Fix handling downsampled STAR inputs in MultiQC
#1319
jkokosar
closed
8 months ago
0
Add support for Python 3.12, remove Jenkins configuration
#1318
gregorjerse
closed
8 months ago
0
Feature/arc runners
#1317
gregorjerse
closed
8 months ago
0
Add simple github actions workflow
#1316
gregorjerse
closed
8 months ago
0
Migrate Jenkins workflow to Github Actions
#1315
plojyon
closed
8 months ago
1
Fix MultiQC with MACS2 in broad peak mode
#1314
jkokosar
closed
8 months ago
0
Prepare release 52.2.0
#1313
jkokosar
closed
8 months ago
0
Add input option to exclude flags in ``samtools-bedcov``
#1312
marcellevstek
closed
9 months ago
0
Add ``samtools-depth-single`` process
#1311
marcellevstek
closed
8 months ago
0
Reword MACS2 documentation
#1310
romunov
closed
9 months ago
0
Bump black version
#1309
gregorjerse
closed
9 months ago
0
Fix input fields for ``workflow-cutnrun-beta``
#1308
marcellevstek
closed
9 months ago
0
Feature: mutations
#1307
gregorjerse
closed
5 months ago
0
Prepare release 55.1.0
#1306
jkokosar
closed
11 months ago
0
Change the process type of ``samtools-bedcov``
#1305
marcellevstek
closed
11 months ago
0
Change ``samtools-bedcov`` process
#1304
marcellevstek
closed
11 months ago
2
Add Cut & Run preprocessing workflow
#1303
marcellevstek
closed
11 months ago
0
Output normalized counts in DESeq2 process
#1302
marcellevstek
closed
11 months ago
0
Fix ``qorts-qc`` hg19 annotation error
#1301
marcellevstek
closed
11 months ago
0
Add Samtools bedcov as a process
#1300
marcellevstek
closed
11 months ago
0
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