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genome-nexus
/
genome-nexus-annotation-pipeline
Library and tool for annotating MAF files using Genome Nexus Webserver API
MIT License
8
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27
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adjust cbioportal hash to release-3.4.0
#134
sheridancbio
closed
4 years ago
1
Update cbio commit hash to latest master (330e4f08d)
#133
ao508
closed
4 years ago
0
Add 'Annotation_Status' field
#132
ao508
closed
4 years ago
0
Instructions for Updating GN Annotation Pipeline
#131
averyniceday
closed
4 years ago
0
output to System.out when empty files are skipped
#130
sheridancbio
closed
4 years ago
1
Prevent annotation when no records extracted from input file.
#129
ao508
closed
4 years ago
1
update to cbioportal 3.3.0
#128
inodb
closed
4 years ago
0
adjust cbioportal hash to latest master head
#127
sheridancbio
closed
4 years ago
0
Reintroduce Re-annotation Flag
#126
averyniceday
closed
4 years ago
0
Resolve DB SNP RS id value
#125
ao508
closed
4 years ago
1
Added my_variant_info gnomad exome allele frequency fields
#124
mandawilson
closed
4 years ago
1
Increase read timeout for ApiClient
#123
ao508
closed
4 years ago
1
GENIE Genome Nexus Documentation
#122
averyniceday
closed
3 years ago
2
Resolve duplicate header comments issue
#121
ao508
closed
4 years ago
0
Migrate GN Annotation Pipeline to Work with Genome Nexus Server Master
#120
averyniceday
closed
4 years ago
7
POST Support and Logging in Annotator
#119
averyniceday
closed
4 years ago
6
update hash for fix for multi-fusion study import
#118
averyniceday
closed
4 years ago
0
adjust cbioportal hash to release_3_2_0
#117
sheridancbio
closed
4 years ago
0
Catch GN annotation failure exceptions
#116
ao508
closed
4 years ago
1
annotation pipeline (and CVR fetcher) notices failed records in response
#115
sheridancbio
closed
4 years ago
4
Add SORT Functionality before Sending POSTS to Server
#114
averyniceday
closed
4 years ago
1
add egfr inframe test example
#113
inodb
closed
4 years ago
0
In_Frame mutation converted to frameshift
#112
inodb
closed
4 years ago
1
VCF - Genome Nexus annotation script
#111
n1zea144
closed
4 years ago
1
Adjust integration test results
#110
sheridancbio
closed
4 years ago
1
Update pom to cbioportal v3.1.6
#109
sheridancbio
closed
4 years ago
0
Use POST requests for GN annotation pipeline
#108
ao508
closed
4 years ago
12
Revert Change for Limiting cBio Dependency
#107
averyniceday
closed
4 years ago
0
Add Genome Nexus version and isoform as comments at top of MAF
#106
mandawilson
closed
4 years ago
0
Configure jitpack to import cbioportal core module only
#105
ao508
closed
4 years ago
0
Update pom to use cbio rc-SNAPSHOT
#104
ao508
closed
4 years ago
0
Update cbioportal commit hash to current rc 10/28/2019
#103
ao508
closed
4 years ago
0
Update cbioportal commit hash to rc head 10/29/2019
#102
ao508
closed
4 years ago
0
update hash test for ascn
#101
averyniceday
closed
4 years ago
0
Update cbioportal jitpack dependency
#100
averyniceday
closed
4 years ago
0
update cbioportal dependency to release-3.1.0 head
#99
sheridancbio
closed
4 years ago
0
Functions added to order headers for MutationRecord
#98
sheridancbio
closed
4 years ago
1
update cbioportal dependency to master head
#97
sheridancbio
closed
5 years ago
0
update commit for cbioportal dependency
#96
averyniceday
closed
5 years ago
0
Automatic Fill for `introgenic_variants` and `IGR`
#95
yichaoS
opened
5 years ago
0
update cbioportal version hash
#94
sheridancbio
closed
5 years ago
0
Better representing of Tumor_Seq_Allele
#93
leexgh
opened
5 years ago
1
check protein length of all canonical transcript (make sure they have it)
#92
inodb
opened
5 years ago
0
build releases and make them available on github
#91
jjgao
opened
5 years ago
2
turn on error log by default
#90
leexgh
closed
5 years ago
0
turn on line number error by default
#89
inodb
closed
5 years ago
0
Add customized columns to annotation file
#88
leexgh
closed
4 years ago
1
Update cBioPortal version
#87
ao508
closed
5 years ago
0
Update GN readme
#86
ao508
closed
5 years ago
0
Update cbioportal commit hash reference
#85
ao508
closed
5 years ago
0
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