issues
search
genome-nexus
/
genome-nexus-annotation-pipeline
Library and tool for annotating MAF files using Genome Nexus Webserver API
MIT License
8
stars
25
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
test annotator
#183
leexgh
closed
2 years ago
0
Update test file
#182
leexgh
closed
2 years ago
3
Update cBioPortal Version
#181
inodb
closed
2 years ago
1
Add Dockerfile
#180
SRodenburg
closed
2 years ago
1
Recreate test file from mskimpact 2017
#179
inodb
opened
2 years ago
0
update cbio commit hash
#178
ao508
closed
2 years ago
0
Upgrade Spring Boot, Spring Batch, and cBioPortal
#177
ao508
closed
2 years ago
1
Handle logging changes for cbioportal 3.6.4 plus upgrade to 3.7.0
#176
inodb
closed
2 years ago
1
use cbioportal v3.7.0
#175
inodb
closed
2 years ago
1
Handle incorrect MAF format for deletions
#174
inodb
closed
3 years ago
1
GN Immutable (chr,start,end,ref,alt1,alt2)
#173
as1000
opened
3 years ago
1
Still annotating when mutation fails annotation
#172
inodb
opened
3 years ago
0
Fix broken integration test environment due to Spring boot migration to 2.3.3.RELEASE (updated from 1.2.7.RELEASE) (PR #169)
#171
ao508
closed
2 years ago
0
Migrate Spring version to 2.3.3.RELEASE
#170
ao508
closed
3 years ago
0
Fix broken Integration Test in GNAP for spring update 2.3.3.RELEASE
#169
ao508
closed
2 years ago
1
Figure out a way to handle default properties
#168
inodb
opened
3 years ago
0
Update spring version and cbioportal version
#167
ao508
closed
3 years ago
2
Update spring boot version
#166
ao508
closed
3 years ago
0
Handle changes to deps in cbioportal v3.6.4
#165
inodb
closed
2 years ago
3
Exclude logging from cbioportal dependency
#164
ao508
closed
3 years ago
0
Handle changes to deps in cbioportal v3.6.4
#163
inodb
closed
3 years ago
2
Add Ref_Tri and Var_Tri columns
#162
inodb
closed
3 years ago
0
Use core module only
#161
inodb
closed
3 years ago
1
Add mvn compiler version
#160
ao508
closed
3 years ago
0
Add exon number column
#159
inodb
closed
3 years ago
0
Add gnomad annotation test
#158
inodb
closed
3 years ago
1
Store immutable version of (chrom,pos,ref,alt1,alt2) in separate columns with prefix
#157
inodb
opened
3 years ago
1
PCM1 DNP annotation issue
#156
inodb
closed
3 years ago
2
update to cbioportal v3.5.0
#155
inodb
closed
3 years ago
0
remove hotspots from being written out
#154
averyniceday
closed
3 years ago
0
Add nightly test circleci
#153
inodb
closed
3 years ago
0
Add p.X963_splice MET splice corner case
#152
inodb
closed
3 years ago
0
update genome-nexus-java-api-client version
#151
sheridancbio
closed
3 years ago
1
update java api client
#150
ao508
closed
3 years ago
0
Update cbioportal commit hash, Sep 25
#149
ao508
closed
3 years ago
0
Support POLYPHEN, SIFT annotations in output annotated MAF
#148
ao508
closed
3 years ago
0
options to add functional impact columns into MAF
#147
jjgao
closed
3 years ago
9
add Ref_Tri and Var_Tri columns
#146
jjgao
closed
3 years ago
0
Cbio core scripts only
#145
ao508
closed
3 years ago
0
Bump hibernate-validator from 5.3.5.Final to 5.3.6.Final in /databaseAnnotator
#144
dependabot[bot]
closed
3 years ago
0
Update cbioportal commit hash for jitpack
#143
ao508
closed
3 years ago
0
rebase cbio on master
#142
ao508
closed
3 years ago
0
Cbio modded dao mutation
#141
ao508
closed
3 years ago
0
Update GN annotation java client.
#140
ao508
closed
4 years ago
0
Msk-mind cohort upload
#139
ritikakundra
closed
4 years ago
0
Bump mysql-connector-java from 5.1.39 to 8.0.16 in /databaseAnnotator
#138
dependabot[bot]
closed
4 years ago
0
Bump hibernate-validator from 5.1.3.Final to 5.3.5.Final in /databaseAnnotator
#137
dependabot[bot]
closed
4 years ago
0
adjust cbioportal hash to latest master head
#136
sheridancbio
closed
4 years ago
0
Update cbio and spring5
#135
ao508
closed
4 years ago
1
adjust cbioportal hash to release-3.4.0
#134
sheridancbio
closed
4 years ago
1
Previous
Next