genome breakdancer issues

genome / breakdancer

SV detection from paired end reads mapping

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issues

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Update bam2cfg.pl

#32 gokalpcelik opened 5 years ago
0
Different chromosomes labeled as ITX

#31 weishwu opened 5 years ago
1
Error during make

#30 stanedav closed 5 years ago
0
Problems with breakdancer outputs

#29 unique379r opened 5 years ago
0
bam2cfg error

#28 xrainbowf opened 5 years ago
0
How to get the orientation of INV and translocations?

#27 weishwu opened 5 years ago
1
How to manually prepare a configuration file

#26 lslochov opened 5 years ago
0
problems with bam2cfg

#25 dribattista opened 6 years ago
2
How can make breakdancer provide genotype information of an SV?

#24 jiangyuanluo opened 6 years ago
0
Empty .cfg

#23 durwa004 opened 6 years ago
0
Problem in installing breakdancer

#22 amrita1983 opened 6 years ago
1
linking error: BamConfigEntry.cpp:(.text+0x1686): undefined reference to boost::re_detail::perl_matcher

#21 zijuexiansheng opened 7 years ago
0
multiple bam SV detection

#20 guillaume-rs opened 7 years ago
4
Questions about the mechanism of breakdancer-max

#19 jiadong324 opened 7 years ago
0
error in building "samtools-lib-build"

#18 Hiuyu opened 8 years ago
11
No error messages when a job doesn't finish properly

#17 wjaratlerdsiri opened 8 years ago
0
BreakDancer-1.1.2 Cpp runtime: taking too long ...

#16 MMesbahU closed 8 years ago
0
Discrepancies between BreakdancerMax default parameter run and -t option run

#15 idarolti opened 8 years ago
1
Compiling breakdancer: ` undefined reference to `std::__detail::_List_node_base::_M_hook`

#14 lindenb closed 8 years ago
2
Sourceforge page hosting old versions?

#13 smowton opened 8 years ago
1
use the chromosome from the alignments in the bed output

#12 ernfrid closed 8 years ago
1
Fix end position calculation.

#11 gatoravi closed 8 years ago
3
Output bed file positions

#10 ponizvezdochka opened 8 years ago
5
install instructions incorrect

#9 igordot opened 8 years ago
29
Documentation should include information on what the flags mean out of bam2cfg

#8 ernfrid opened 9 years ago
0
Drastic differences between identical breakdancer runs

#7 fpbarthel opened 9 years ago
18
breakdancer to vcf

#6 boboppie closed 9 years ago
1
bam2cfg should provide feedback to the user about potential BAM problems

#5 ernfrid opened 10 years ago
0
Update compile and package

#4 ernfrid closed 10 years ago
1
allow for readgroup IDs to be unique by file (rather than unique overall...)

#3 bpow closed 11 years ago
0
Update perl/bam2cfg.pl

#2 yangjr closed 11 years ago
2
Correctly handle readgroups with ID of 0

#1 bpow closed 11 years ago
0