What needs to be done:
Add automatic picard start to the MUTANT/sars-cov-2 pipeline
Add automatic multiqc start to the MUTANT/sars-cov-2 pipeline
Suggestions on how to get it done:
Make functions under QC.nf and throw it onto illumina and nanopore workflows
What are the arguments for getting it done:
The multiqc report is kind of cute in general and can be sold off as a nice QC report.
The generated json file is super useful downstream
Task is considered finished when:
The testdata generates a multiqc file upon standard analysis
sylvinite
commented
3 years ago
What needs to be done: Add automatic picard start to the MUTANT/sars-cov-2 pipeline Add automatic multiqc start to the MUTANT/sars-cov-2 pipeline
Suggestions on how to get it done: Make functions under QC.nf and throw it onto illumina and nanopore workflows
What are the arguments for getting it done: The multiqc report is kind of cute in general and can be sold off as a nice QC report. The generated json file is super useful downstream
Task is considered finished when: The testdata generates a multiqc file upon standard analysis