What needs to be done:
Now the pipeline takes a folder of fastqs as input. When using the HCP many users will probably not have all samples to be included in the start in the same folder. So instead perhaps this should be read in from a list. This is most likely the metadatalist for the future.
Suggestions on how to get it done:
Have the pipe read filenames from a file instead of expecting fastqs in a folder.
What are the arguments for getting it done:
Will be easier to start subsets of samples from HCP, especially when having non-structured uploads to the HCOP
Task is considered finished when:
Pipeline can be started from a list of samplenames and file locations.
What needs to be done: Now the pipeline takes a folder of fastqs as input. When using the HCP many users will probably not have all samples to be included in the start in the same folder. So instead perhaps this should be read in from a list. This is most likely the metadatalist for the future.
Suggestions on how to get it done: Have the pipe read filenames from a file instead of expecting fastqs in a folder.
What are the arguments for getting it done: Will be easier to start subsets of samples from HCP, especially when having non-structured uploads to the HCOP
Task is considered finished when: Pipeline can be started from a list of samplenames and file locations.