Update of nextclade in the environment file for Illumina and Nanopore

genomic-medicine-sweden / gms-artic

A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics).

GNU Affero General Public License v3.0

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Update of nextclade in the environment file for Illumina and Nanopore #41

Closed sofstam closed 2 years ago

sofstam commented 2 years ago

What needs to be done: Update of nextclade in the environment files for Illumina and Nanopore (https://github.com/nextstrain/nextclade/releases)

Linköping and Göteborg have encountered problems with Nextclade:

What needs to be done

[x] Update nextclade_js=0.14.4 to nextclade=1.8.1

Linköping: https://github.com/Genomic-Medicine-Linkoping/gms-artic/tree/roi

sofstam commented 2 years ago

This is now implemented (#43)