genomic-medicine-sweden / gms-artic

A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics).
GNU Affero General Public License v3.0
8 stars 6 forks source link

Adding *primer.bed file for midnight primer scheme #44

Closed henningonsbring closed 2 years ago

henningonsbring commented 2 years ago

The purpose of the code changes are as follows:

To enable analysis with the midnight primer scheme I am adding nCoV-2019.primer.bed in the midnight folder.

nCoV-2019.primer.bed is needed because of line 12 in artic.nf: path "${params.schemeDir}/${params.scheme}/${params.schemeVersion}/*.primer.bed" , emit: bed

Standard test procedure

This version is a: