genomic-medicine-sweden meta-val issues

genomic-medicine-sweden / meta-val

nf-core/taxprofiler post-processing; verification of classification results; consensus maps

MIT License

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issues

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Add nf-test to each test config

#32 LilyAnderssonLee opened 1 week ago
1
Call consensus for pathogen screening

#31 LilyAnderssonLee opened 3 weeks ago
1
Template update for nf-core/tools version 3.0.2

#30 LilyAnderssonLee closed 3 weeks ago
1
Fix nf-core.yml file

#29 LilyAnderssonLee closed 1 month ago
0
nf-core-template-merge-3.0.0

#28 sofstam closed 3 weeks ago
1
Improve the computation efficiency of the local module: EXTRACTCENTRIFUGEREADS & EXTRACTCDIAMONDREADS

#27 LilyAnderssonLee opened 1 month ago
0
Add consensus calling to pathogen screening pipeline

#26 LilyAnderssonLee opened 1 month ago
0
add denovo to the pipeline

#25 LilyAnderssonLee closed 3 weeks ago
2
Add de-novo assembly tools

#24 LilyAnderssonLee closed 3 weeks ago
0
Prepare fastq file of mapped reads for each pathogen after mapping against pathogen genomes

#23 LilyAnderssonLee opened 4 months ago
0
Prepare a test dataset for screening viral pathogens

#22 LilyAnderssonLee closed 3 months ago
0
Add mapping tools and viral pathogen List

#21 LilyAnderssonLee closed 4 months ago
1
Prepare a list of viral pathogens

#20 LilyAnderssonLee opened 5 months ago
0
Add bowtie2/minimap2 to perform mapping

#19 LilyAnderssonLee closed 4 months ago
0
Add hasta config

#18 LilyAnderssonLee closed 5 months ago
1
Template update for nf-core/tools version 2.14.1

#17 LilyAnderssonLee closed 5 months ago
2
Create CODEOWNERS

#16 pbiology closed 6 months ago
3
Extract reads for viral taxids

#15 LilyAnderssonLee closed 5 months ago
1
Add the module krakentools/extractkrakenreads to the pipeline

#14 LilyAnderssonLee closed 5 months ago
1
Template update for nf-core/tools version 2.13.1

#13 LilyAnderssonLee closed 8 months ago
1
nf-validation plugin for input samplesheet

#12 LilyAnderssonLee closed 8 months ago
4
Template update for nf-core/tools v2.12

#11 LilyAnderssonLee closed 9 months ago
1
nf-validation plugin for samplesheet validation

#10 LilyAnderssonLee closed 9 months ago
1
Update the template into nf-core 2.11.1

#9 LilyAnderssonLee closed 10 months ago
1
Template update for nf-core/tools version 2.11.1

#8 LilyAnderssonLee closed 10 months ago
2
nf-validation plugin for samplesheet validation

#7 LilyAnderssonLee closed 10 months ago
4
Extract reads of species of interests

#6 LilyAnderssonLee closed 5 months ago
1
Prepare a test dataset

#5 LilyAnderssonLee closed 10 months ago
1
structure the samplesheet

#4 LilyAnderssonLee closed 11 months ago
0
Prepare and structure input

#3 LilyAnderssonLee closed 10 months ago
0
Prepare a taxID list

#2 LilyAnderssonLee closed 5 months ago
1
short summary in README.md

#1 LilyAnderssonLee closed 12 months ago
0