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genomic-medicine-sweden
/
tomte
A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
MIT License
12
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3
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adding more citations
#88
jemten
closed
8 months ago
1
Merge dev to master
#87
Lucpen
closed
8 months ago
1
Merge master
#86
Lucpen
closed
8 months ago
1
substitute bgzip and tabix for bgzip_tabix
#85
Lucpen
closed
8 months ago
1
changing the name of some files
#84
jemten
closed
8 months ago
1
move vcf merging to after bootstrapann
#83
Lucpen
closed
8 months ago
1
renaming sample vcf to case
#82
jemten
closed
8 months ago
1
collect gtf
#81
Lucpen
closed
8 months ago
1
merge case vcfs
#80
Lucpen
closed
8 months ago
1
Change name drop output
#79
Lucpen
closed
8 months ago
1
feat changed name of quant.sf
#78
Lucpen
closed
8 months ago
1
feat update modules and config file
#77
Lucpen
closed
8 months ago
1
feat updated igenomes.config
#76
Lucpen
closed
8 months ago
1
fix made platform into a chanel
#75
Lucpen
closed
8 months ago
1
update schema
#74
jemten
closed
9 months ago
1
Template patch v2.13.1
#73
jemten
closed
9 months ago
1
feat fix_caseid and naming of drop output
#72
Lucpen
closed
9 months ago
1
updating template
#71
jemten
closed
9 months ago
1
Update to v2.13 of nf-core TEMPLATE
#70
jemten
closed
9 months ago
0
fix prev merge
#69
Lucpen
closed
9 months ago
3
feat fixed drop output format
#68
Lucpen
closed
9 months ago
0
Vep
#67
Lucpen
closed
10 months ago
1
feat added nf-validation
#66
Lucpen
closed
10 months ago
1
Updating template
#65
Lucpen
closed
10 months ago
2
Add custom genome config file instead of igenomes
#64
A97paupic
closed
8 months ago
5
fix fai
#63
Lucpen
closed
11 months ago
1
Missing fasta_fai channel when fai file is given
#62
jemten
closed
11 months ago
0
Solve some issues
#61
Lucpen
closed
11 months ago
1
Add an optional column for sex in DROP annotation
#60
Lucpen
closed
1 month ago
6
Enable bam input
#59
jemten
opened
1 year ago
0
trying to fix star_index channel cardinality
#58
jemten
closed
1 year ago
1
adding closures to modules.config
#57
jemten
closed
1 year ago
1
Split the configuration file
#56
jemten
closed
11 months ago
0
feat bumped up
#55
Lucpen
closed
1 year ago
1
feat bumped up
#54
Lucpen
closed
1 year ago
1
feat add date
#53
Lucpen
closed
1 year ago
1
feat add date
#52
Lucpen
closed
1 year ago
1
Dev
#51
Lucpen
closed
1 year ago
1
Add option of choosing name of the DROP output files
#50
Lucpen
closed
11 months ago
0
Add documentation
#49
Lucpen
closed
1 year ago
1
Add more switches
#48
Lucpen
closed
11 months ago
0
updating name of process in config
#47
jemten
closed
1 year ago
1
trying to fix the concatenation of fastq files
#46
jemten
closed
1 year ago
2
changing some references from nf-core to gms
#45
jemten
closed
1 year ago
1
Testing full pipeline
#44
Lucpen
closed
1 year ago
1
Switch to nf-core version of VEP
#43
jemten
closed
10 months ago
0
Implement nf-validation
#42
jemten
closed
10 months ago
1
Document the pipeline
#41
jemten
closed
1 year ago
0
feat add metro-map
#40
Lucpen
closed
1 year ago
1
adding codeowners file
#39
jemten
closed
1 year ago
3
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