Data pipeline for analyzing spike2 collected data in phy
There is one script which will get your data from probe-the-broab into the KWD format that phy requires.
make_kwd {rig} {probe} {path_to_matfiles} {path_to_save_kwd}
make_kwd
will spit out all the data and config files necessary for phy in the directory you specified.phy spikesort params.prm
to begin automatic clustering.phy cluster-manual {output.kwik}
to begin manual sorting. merge_stim_kwik {path_to_matfiles} {path_to_kwikfile}
to merge events into the kwikfilemerge_stim_kwik
to run successfully