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geodesymiami / rsmas_insar

RSMAS InSAR code
https://rsmas-insar.readthedocs.io/
GNU General Public License v3.0
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`email_pysar_results` List Index Out of Range Error #100

Closed Ovec8hkin closed 5 years ago

Ovec8hkin commented 5 years ago

run_operations.py exits prematurely due to errors thrown in process_rsmas.py, specifically the one listed below.

Traceback (most recent call last):
  File "/nethome/jaz101/test/test4/rsmas_insar/sources/rsmas_isce/process_rsmas.py", line 124, in <module>
    prs.run_pysar(inps, start_time)
  File "/nethome/jaz101/test/test4/rsmas_insar/sources/rsmas_isce/_processSteps.py", line 399, in run_pysar
    putils.email_pysar_results(time_str, inps.custom_template)
  File "/nethome/jaz101/test/test4/rsmas_insar/sources/rsmas_isce/_process_utilities.py", line 366, in email_pysar_results
    template_file = glob.glob('PYSAR/INPUTS/*.template')[0]
IndexError: list index out of range

This error needs to be solved before run_operations.py will work as expected. To test, checkout the run_operations_new branch from git, and run the below command:

run_operations.py --sheet_id 1CPg29RhjBVdWLdTk50RyoX0Fk0Ab-piZMMwJRvHIipc

falkamelung commented 5 years ago

I only saw this today. You don't have any data in your PYSAR folder. Something is wrong with your versions/branches or RSMAS_isce or pysar. I am running testGalapagosSenDT128 in my area and it seems to work fine (but has not finished yet) @Ovec8hkin @mirzaees

/projects/scratch/insarlab/famelung/testGalapagosSenDT128

Ovec8hkin commented 5 years ago

@falkamelung You're running run_operations.py from the run_operations_new branch on your end, and it doesn't throw that error? That would imply my version of PySAR is outdated.

falkamelung commented 5 years ago

Yes. It was a too old PYSAR version. I updated your PySAR (your test4) and pysarApp.py works fine. However, there is something else weird with your branch (I am on your master). When I run process_rsmas.py /nethome/jaz101/insarlab/OPERATIONS/TEMPLATES/testGalapagosSenDT128.template --startpysar —submit It runs fine but it does not submit as a job. Something is not updated. I did not try updating your rsmas_isce

Also, when you run the test data (see below) it does not submit as a job, but otherwise works fine.

process_rsmas.py /nethome/jaz101/test/test4/rsmas_insar/samples/unittestGalapagosSenDT128.template --startmakerun —submit

Falk Amelung Professor Department of Marine Geosciences Rosenstiel School of Marine and Atmospheric Sciences University of Miami 4600 Rickenbacker Causeway Miami, FL 33149 USA Tel: 305 421 4949 E-mail: famelung@rsmas.miami.edumailto:famelung@rsmas.miami.edu Web: http://insar.rsmas.miami.edu InSAR data: http://insarmaps.miami.edu

On Mar 19, 2019, at 7:57 PM, Joshua Zahner notifications@github.com<mailto:notifications@github.com> wrote:

@falkamelunghttps://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Ffalkamelung&data=02%7C01%7Cfamelung%40rsmas.miami.edu%7C556015ed3e5d47a14bc208d6accefe2b%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636886402358842095&sdata=PmqnDRyxpNPNDdWMND1mzSAgYJx%2F2HDyskHagFDvMh8%3D&reserved=0 You're running run_operations.py from the run_operations_new branch on your end, and it doesn't throw that error? That would imply my version of PySAR is outdated.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fgeodesymiami%2Frsmas_isce%2Fissues%2F100%23issuecomment-474641852&data=02%7C01%7Cfamelung%40rsmas.miami.edu%7C556015ed3e5d47a14bc208d6accefe2b%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636886402358842095&sdata=rS5nznvJdMQ0%2BiNlmmw2%2FHfUeRQsm%2BzJY77e3TeI8qY%3D&reserved=0, or mute the threadhttps://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAKpT3E01IxcD7Eawkruy6hS7ErKAve_2ks5vYYdqgaJpZM4b29ES&data=02%7C01%7Cfamelung%40rsmas.miami.edu%7C556015ed3e5d47a14bc208d6accefe2b%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636886402358852099&sdata=21nBlCqT3V%2B7c3CtTYybjAOYo0Ui23vvkKeN6GQ63kE%3D&reserved=0.

falkamelung commented 5 years ago

I would think if you just merge your new run_operations.py (and whatever is run_operations specific) into master things will work.

Falk Amelung Professor Department of Marine Geosciences Rosenstiel School of Marine and Atmospheric Sciences University of Miami 4600 Rickenbacker Causeway Miami, FL 33149 USA Tel: 305 421 4949 E-mail: famelung@rsmas.miami.edumailto:famelung@rsmas.miami.edu Web: http://insar.rsmas.miami.edu InSAR data: http://insarmaps.miami.edu

On Mar 19, 2019, at 9:52 PM, Amelung, Falk C famelung@rsmas.miami.edu<mailto:famelung@rsmas.miami.edu> wrote:

Yes. It was a too old PYSAR version. I updated your PySAR (your test4) and pysarApp.py works fine. However, there is something else weird with your branch (I am on your master). When I run process_rsmas.py /nethome/jaz101/insarlab/OPERATIONS/TEMPLATES/testGalapagosSenDT128.template --startpysar —submit It runs fine but it does not submit as a job. Something is not updated. I did not try updating your rsmas_isce

Also, when you run the test data (see below) it does not submit as a job, but otherwise works fine.

process_rsmas.py /nethome/jaz101/test/test4/rsmas_insar/samples/unittestGalapagosSenDT128.template --startmakerun —submit

Falk Amelung Professor Department of Marine Geosciences Rosenstiel School of Marine and Atmospheric Sciences University of Miami 4600 Rickenbacker Causeway Miami, FL 33149 USA Tel: 305 421 4949 E-mail: famelung@rsmas.miami.edumailto:famelung@rsmas.miami.edu Web: http://insar.rsmas.miami.edu InSAR data: http://insarmaps.miami.eduhttps://nam01.safelinks.protection.outlook.com/?url=http%3A%2F%2Finsarmaps.miami.edu&data=02%7C01%7Cfamelung%40rsmas.miami.edu%7Ce197e573a4aa4466917b08d6acdf27d3%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636886471772429921&sdata=EsrGJkHpwOX3bZVadXWCxMFW4k2Kb2eNn5HwVVt%2FNQA%3D&reserved=0

On Mar 19, 2019, at 7:57 PM, Joshua Zahner notifications@github.com<mailto:notifications@github.com> wrote:

@falkamelunghttps://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Ffalkamelung&data=02%7C01%7Cfamelung%40rsmas.miami.edu%7Ce197e573a4aa4466917b08d6acdf27d3%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636886471772439926&sdata=Wu5KQuqPWOABivPaM%2F04H9uYey9yhRpFqsz0A72Tz8M%3D&reserved=0 You're running run_operations.py from the run_operations_new branch on your end, and it doesn't throw that error? That would imply my version of PySAR is outdated.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fgeodesymiami%2Frsmas_isce%2Fissues%2F100%23issuecomment-474641852&data=02%7C01%7Cfamelung%40rsmas.miami.edu%7Ce197e573a4aa4466917b08d6acdf27d3%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636886471772439926&sdata=%2FlZDmrX73Ovc9yNVo60G%2BZcNSOa1AXa5MmDRt7D5dSA%3D&reserved=0, or mute the threadhttps://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAKpT3E01IxcD7Eawkruy6hS7ErKAve_2ks5vYYdqgaJpZM4b29ES&data=02%7C01%7Cfamelung%40rsmas.miami.edu%7Ce197e573a4aa4466917b08d6acdf27d3%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636886471772449935&sdata=3aSTjRR6ala4xUzrNo8Ey8w8cM8wQqSMZWLjYdQgLCw%3D&reserved=0.

falkamelung commented 5 years ago

My response resolves, this, right? I am closing the issue.