Troubleshooting installation

[falkamelung]

Occasionally there are conda installation problems which appear unreproducible, in most cases related to MiaplPy. Run the conda/mamba commands individually and look out for errors. The following worked for me:

• if mamba produces an error try two things: First rerun the installation using conda. If that does not solve the issue, uninstall and then reinstall mamba:

  ../tools/miniconda3/bin/conda uninstall mamba --yes  
  ../tools/miniconda3/bin/conda install mamba --yes  

• if conda produces an error rerun the installation using mamba. If the issue persists, uninstall mamba

• If you see ModuleNotFoundError: No module named 'miaplpy.objects' make sure you are in the base environment using

../tools/miniconda3/bin/conda info --env
conda info --env

and run again:

../tools/miniconda3/bin/pip install --no-deps -e ../tools/MiaplPy

• For a quick test of miaplpyApp.py run:

  miaplpyApp.py $SAMPLESDIR/unittestGalapagosSenDT128.template --dir miaplpy_test

• for testing installations it is faster to work on a node using /bin/idev -p skx-dev -N 1 -n 48 -m 120 and install on $SCRATCH or /tmp. Make sure you have these alias in your .bashrc for testing:

  alias s.bw2='export RSMASINSAR_HOME=${WORK2%/*}/stampede2/code/rsmas_insar; source_environment'
  alias s.bs='export RSMASINSAR_HOME=${SCRATCH}/code/rsmas_insar; source_environment'
  alias s.bst1='export RSMASINSAR_HOME=${SCRATCH}/codet1/rsmas_insar; source_environment'
  alias s.bst2='export RSMASINSAR_HOME=${SCRATCH}/codet2/rsmas_insar; source_environment'
  alias s.bw2t1='export RSMASINSAR_HOME=${WORK2%/*}/stampede2/codet1/rsmas_insar; source_environment'
  alias s.bw2t2='export RSMASINSAR_HOME=${WORK2%/*}/stampede2/codet2/rsmas_insar; source_environment'

[falkamelung]

Seems to be solved after updating installation.md