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geronimp
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enrichM
Toolbox for comparative genomics of MAGs
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Tests
#38
geronimp
closed
6 years ago
0
Tests 2
#37
geronimp
closed
6 years ago
0
Empty TIGRfam Pfam annotations
#36
adityabandla
closed
5 years ago
5
enrichm data command error
#35
adityabandla
closed
6 years ago
3
Parallel pfam
#34
geronimp
closed
6 years ago
0
Annotate pooled proteins in KO pipeline
#33
geronimp
closed
5 years ago
0
Mmseqs
#32
geronimp
closed
6 years ago
0
patch
#31
geronimp
closed
7 years ago
0
Add CAZY annotation
#30
geronimp
closed
5 years ago
1
enrichm reports kos encoded by genome to carry out a pathway
#29
geronimp
closed
7 years ago
0
Version fix
#28
geronimp
closed
7 years ago
0
minor
#27
geronimp
closed
7 years ago
0
Fixing steps
#26
geronimp
closed
7 years ago
0
add marker genes for modules
#25
geronimp
closed
4 years ago
0
Rpair option needs to be re-implemented in pathway and explore
#24
geronimp
closed
5 years ago
0
Improve definition of KEGG steps
#23
geronimp
closed
7 years ago
0
removing_uneeded_module_loads, added warning message for when metabol…
#22
geronimp
closed
7 years ago
0
Added error message when no genomes are found for annotation
#21
geronimp
closed
7 years ago
0
dev-expanding_annotation_types
#20
geronimp
closed
7 years ago
0
Dev expanding annotation types
#19
geronimp
closed
7 years ago
0
don't pass args to class
#18
geronimp
closed
7 years ago
0
Add doco
#17
geronimp
opened
7 years ago
1
Add tests
#16
geronimp
closed
5 years ago
0
Add metabolome option to all network options
#15
geronimp
closed
7 years ago
0
Updated readme
#14
geronimp
closed
7 years ago
0
Change output file specification
#13
geronimp
closed
7 years ago
0
geronimp-use_metadata_for_enrichment_matrix
#12
geronimp
closed
7 years ago
0
Fixed error when interpreting KEGG modules
#11
geronimp
closed
7 years ago
0
Geronimp prepare
#10
geronimp
closed
7 years ago
0
Geronimp fix ko matrix input
#9
geronimp
closed
7 years ago
0
genome enhancements
#8
geronimp
closed
7 years ago
0
Geronimp add custom module definitions
#7
geronimp
closed
7 years ago
0
Geronimp add genome abundances
#6
geronimp
closed
7 years ago
0
Addition of annotate option - determines which modules are present wi…
#5
geronimp
closed
7 years ago
0
Geronimp pathway
#4
geronimp
closed
7 years ago
0
Geronimp pathway
#3
geronimp
closed
7 years ago
0
Geronimp fix create whole network
#2
geronimp
closed
7 years ago
0
Toward cleaner code
#1
geronimp
closed
7 years ago
0
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