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geronimp
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enrichM
Toolbox for comparative genomics of MAGs
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Cannot install using conda
#87
hkoo877
opened
5 years ago
2
ZeroDivisionError in annotate
#86
ganiatgithub
opened
5 years ago
3
Geronimp cleanup of annotate
#85
geronimp
closed
5 years ago
0
GFF generating failure when supplying own proteomes
#84
wwood
closed
4 years ago
3
annotate: Soft link rather than copy input genomes.
#83
wwood
closed
5 years ago
2
Large disk usage for lotsa genomes input
#82
wwood
closed
5 years ago
1
super long run time for 2 genomes
#81
ganiatgithub
opened
5 years ago
4
classify error : ZeroDivisionError: division by zero
#80
michoug
closed
4 years ago
1
enrichm annotate fasta file error
#79
TYMichaelsen
closed
5 years ago
2
--custom_modules not working
#78
TYMichaelsen
closed
4 years ago
3
help page/wiki
#77
ganiatgithub
closed
5 years ago
4
Missing ko_cutoffs.tsv in the database
#76
michoug
closed
5 years ago
3
Linting and tests
#75
geronimp
closed
5 years ago
0
Directionality on reactions for enrichm pathway/explore?
#74
TYMichaelsen
closed
5 years ago
2
Refactoring
#73
geronimp
closed
5 years ago
0
Make --metadata optional in enrichm pathway/explore?
#72
TYMichaelsen
closed
5 years ago
3
custom modules for metacyc
#71
geronimp
closed
5 years ago
0
enrichm explore AttributeError
#70
TYMichaelsen
closed
5 years ago
7
dump
#69
geronimp
closed
5 years ago
0
nucleotide introduced, new flags
#68
geronimp
closed
5 years ago
0
Code cleanup
#67
geronimp
closed
5 years ago
0
Classify bugs
#66
geronimp
closed
5 years ago
0
Kohmm cutoffs
#65
geronimp
closed
5 years ago
0
Module problems
#64
geronimp
closed
5 years ago
0
Ben bug
#63
geronimp
closed
5 years ago
0
bin: Adjust an author name.
#62
wwood
closed
5 years ago
1
Add ko hmm annotation pipeline
#61
geronimp
closed
5 years ago
0
setup.py: Specify 'scikit-learn' not 'sklearn'.
#60
wwood
closed
5 years ago
0
Improving network
#59
geronimp
closed
5 years ago
0
test
#58
geronimp
closed
5 years ago
0
missing ec_to_description.26-11-2018.pickle
#57
kfiedoruk
closed
5 years ago
1
enrichment working for ec
#56
geronimp
closed
5 years ago
0
seqmagick removed, sponge used instead, version bump
#55
geronimp
closed
5 years ago
0
EC definitions can now be provided to classify
#54
geronimp
closed
5 years ago
0
Touch ups
#53
geronimp
closed
5 years ago
0
Code touch ups
#52
geronimp
closed
5 years ago
0
Amenments
#51
geronimp
closed
5 years ago
0
Amenments
#50
geronimp
closed
5 years ago
0
Link
#49
geronimp
closed
5 years ago
0
enrichm data components missing
#48
TYMichaelsen
closed
5 years ago
2
Dep check
#47
geronimp
closed
5 years ago
0
Code cleanup
#46
geronimp
closed
5 years ago
0
the --suffix option is not writeable
#45
TYMichaelsen
closed
5 years ago
4
Travis
#44
geronimp
closed
5 years ago
0
python 3 compatible
#43
geronimp
closed
5 years ago
0
ml add 2
#42
geronimp
closed
5 years ago
0
Gtdb link
#41
geronimp
closed
5 years ago
0
Diamond database version
#40
jwestrob
closed
5 years ago
8
Connect to gtdb
#39
geronimp
closed
6 years ago
0
Tests
#38
geronimp
closed
6 years ago
0
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